Seurat meets tidyverse. The best of both worlds.
☆166Mar 3, 2026Updated 2 months ago
Alternatives and similar repositories for tidyseurat
Users that are interested in tidyseurat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Brings bulk and pseudobulk transcriptomics to the tidyverse☆179May 5, 2026Updated 2 weeks ago
- Brings SingleCellExperiment objects to the tidyverse☆37Nov 10, 2025Updated 6 months ago
- Draw heatmap simply using a tidy data frame☆360Feb 7, 2026Updated 3 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆300May 11, 2026Updated 2 weeks ago
- Label elements within user drawn gates☆25Oct 10, 2025Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆327Nov 1, 2022Updated 3 years ago
- The blog of tidyomics☆13Jul 12, 2025Updated 10 months ago
- Brings SummarizedExperiment to the tidyverse☆30Mar 17, 2026Updated 2 months ago
- ☆17Sep 28, 2022Updated 3 years ago
- ☆10Oct 6, 2020Updated 5 years ago
- An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…☆114May 5, 2026Updated 2 weeks ago
- R package for integrating and analyzing multiple single-cell datasets☆429Feb 4, 2026Updated 3 months ago
- Community-provided extensions to Seurat☆363Feb 17, 2026Updated 3 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 5 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Dec 18, 2024Updated last year
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 3 months ago
- Simplify functional enrichment results☆125Jan 30, 2026Updated 3 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Apr 16, 2025Updated last year
- R package for detecting doublets in single-cell RNA sequencing data☆548Mar 21, 2025Updated last year
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆125Updated this week
- Fast Wilcoxon and auROC☆210May 5, 2026Updated 2 weeks ago
- NicheNet: predict active ligand-target links between interacting cells☆646Nov 12, 2025Updated 6 months ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Various utility functions for Seurat v5 single-cell analysis☆67Updated this week
- Multi-sample multi-group scRNA-seq analysis tools☆229Apr 28, 2026Updated 3 weeks ago
- Harvard FAS informatics scRNAseq workshop website☆39Aug 8, 2019Updated 6 years ago
- ☆65Mar 18, 2025Updated last year
- Methods for detecting doublets in single-cell sequencing data☆251Updated this week
- TRAjectory-based Differential Expression analysis for SEQuencing data☆295Jun 17, 2025Updated 11 months ago
- Interactively analyze single cell genomic data☆187Jan 14, 2026Updated 4 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆339Jul 28, 2020Updated 5 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆18Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Create anatograms using ggplot2☆403Aug 7, 2025Updated 9 months ago
- ☆73May 28, 2025Updated 11 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Mar 13, 2026Updated 2 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆787Jan 6, 2024Updated 2 years ago
- AUCell: score single cells with gene regulatory networks☆191Mar 9, 2024Updated 2 years ago
- Multi-Omics Factor Analysis☆399Updated this week
- R/shiny interface for interactive visualization of data in SummarizedExperiment objects☆230Jan 14, 2026Updated 4 months ago