Seurat meets tidyverse. The best of both worlds.
☆162Feb 26, 2026Updated last week
Alternatives and similar repositories for tidyseurat
Users that are interested in tidyseurat are comparing it to the libraries listed below
Sorting:
- Brings bulk and pseudobulk transcriptomics to the tidyverse☆176Nov 12, 2025Updated 3 months ago
- Brings SingleCellExperiment objects to the tidyverse☆37Nov 10, 2025Updated 3 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆289Feb 26, 2026Updated last week
- Draw heatmap simply using a tidy data frame☆357Feb 7, 2026Updated 3 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆315Nov 1, 2022Updated 3 years ago
- ☆17Sep 28, 2022Updated 3 years ago
- Simplify functional enrichment results☆124Jan 30, 2026Updated last month
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 3 months ago
- R package for integrating and analyzing multiple single-cell datasets☆424Feb 4, 2026Updated last month
- Label elements within user drawn gates☆25Oct 10, 2025Updated 4 months ago
- Community-provided extensions to Seurat☆358Feb 17, 2026Updated 2 weeks ago
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆120Feb 23, 2026Updated last week
- An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…☆113Feb 6, 2026Updated 3 weeks ago
- A package to help convert different single-cell data formats to each other☆458Feb 20, 2026Updated last week
- Brings SummarizedExperiment to the tidyverse☆30Dec 22, 2025Updated 2 months ago
- The blog of tidyomics☆14Jul 12, 2025Updated 7 months ago
- An R Package for Geneset Enrichment Workflows☆79Dec 11, 2025Updated 2 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆218Feb 16, 2026Updated 2 weeks ago
- Fast Wilcoxon and auROC☆204Nov 8, 2024Updated last year
- Interactively analyze single cell genomic data☆185Jan 14, 2026Updated last month
- R package for detecting doublets in single-cell RNA sequencing data☆525Mar 21, 2025Updated 11 months ago
- ☆71May 28, 2025Updated 9 months ago
- Methods for detecting doublets in single-cell sequencing data☆231Feb 12, 2026Updated 3 weeks ago
- NicheNet: predict active ligand-target links between interacting cells☆620Nov 12, 2025Updated 3 months ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆290Jun 17, 2025Updated 8 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Jul 23, 2025Updated 7 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆323Jul 28, 2020Updated 5 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Apr 16, 2025Updated 10 months ago
- R/shiny interface for interactive visualization of data in SummarizedExperiment objects☆229Jan 14, 2026Updated last month
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆214Dec 10, 2025Updated 2 months ago
- Easy single cell analysis platform for enrichment☆215Jan 4, 2026Updated 2 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆219Feb 26, 2024Updated 2 years ago
- Collection of cell type reference datasets.☆64May 31, 2024Updated last year
- Table of software for the analysis of single-cell RNA-seq data.☆338Feb 26, 2026Updated last week
- Harvard FAS informatics scRNAseq workshop website☆39Aug 8, 2019Updated 6 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- High dimensional weighted gene co-expression network analysis☆465Feb 13, 2026Updated 2 weeks ago
- R package to infer biological activities from omics data using a collection of methods.☆286Dec 16, 2025Updated 2 months ago
- Extension of SpatialExperiment with sf☆57Feb 19, 2026Updated 2 weeks ago