Seurat meets tidyverse. The best of both worlds.
☆166Mar 3, 2026Updated 4 months ago
Alternatives and similar repositories for tidyseurat
Users that are interested in tidyseurat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Brings bulk and pseudobulk transcriptomics to the tidyverse☆181Jun 4, 2026Updated last month
- Brings SingleCellExperiment objects to the tidyverse☆37Updated this week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆304Jun 30, 2026Updated 3 weeks ago
- Draw heatmap simply using a tidy data frame☆361Feb 7, 2026Updated 5 months ago
- Label elements within user drawn gates☆25Oct 10, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆335Nov 1, 2022Updated 3 years ago
- The blog of tidyomics☆13Jul 12, 2025Updated last year
- Brings SummarizedExperiment to the tidyverse☆30Mar 17, 2026Updated 4 months ago
- ☆10Oct 6, 2020Updated 5 years ago
- An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…☆118May 5, 2026Updated 2 months ago
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 5 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆90Dec 4, 2025Updated 7 months ago
- Community-provided extensions to Seurat☆369Jun 29, 2026Updated 3 weeks ago
- ☆17Sep 28, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Dec 18, 2024Updated last year
- A package to help convert different single-cell data formats to each other☆473Feb 20, 2026Updated 5 months ago
- Simplify functional enrichment results☆127Jan 30, 2026Updated 5 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆126Apr 16, 2025Updated last year
- R package for detecting doublets in single-cell RNA sequencing data☆554Mar 21, 2025Updated last year
- Fast Wilcoxon and auROC☆214May 5, 2026Updated 2 months ago
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆129Updated this week
- Harvard FAS informatics scRNAseq workshop website☆39Aug 8, 2019Updated 6 years ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- NicheNet: predict active ligand-target links between interacting cells☆665Jun 1, 2026Updated last month
- ☆65Mar 18, 2025Updated last year
- TRAjectory-based Differential Expression analysis for SEQuencing data☆306Jun 17, 2025Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆794Jan 6, 2024Updated 2 years ago
- Interactively analyze single cell genomic data☆188Jan 14, 2026Updated 6 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆346Jul 28, 2020Updated 5 years ago
- Methods for detecting doublets in single-cell sequencing data☆258Jul 7, 2026Updated 2 weeks ago
- Multi-sample multi-group scRNA-seq analysis tools☆237Jul 6, 2026Updated 2 weeks ago
- Create anatograms using ggplot2☆404Aug 7, 2025Updated 11 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Easy single cell analysis platform for enrichment☆228Apr 3, 2026Updated 3 months ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆18Updated this week
- ☆74May 28, 2025Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆145Mar 13, 2026Updated 4 months ago
- An R Package for Geneset Enrichment Workflows☆79Updated this week
- Multi-Omics Factor Analysis☆411Updated this week
- R/shiny interface for interactive visualization of data in SummarizedExperiment objects☆230Jul 13, 2026Updated last week