Seurat meets tidyverse. The best of both worlds.
☆162Mar 3, 2026Updated 3 weeks ago
Alternatives and similar repositories for tidyseurat
Users that are interested in tidyseurat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Brings bulk and pseudobulk transcriptomics to the tidyverse☆178Mar 18, 2026Updated last week
- Brings SingleCellExperiment objects to the tidyverse☆37Nov 10, 2025Updated 4 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆293Mar 5, 2026Updated 2 weeks ago
- Draw heatmap simply using a tidy data frame☆359Feb 7, 2026Updated last month
- Label elements within user drawn gates☆25Oct 10, 2025Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆317Nov 1, 2022Updated 3 years ago
- The blog of tidyomics☆14Jul 12, 2025Updated 8 months ago
- Brings SummarizedExperiment to the tidyverse☆30Mar 17, 2026Updated last week
- ☆17Sep 28, 2022Updated 3 years ago
- ☆10Oct 6, 2020Updated 5 years ago
- R package for integrating and analyzing multiple single-cell datasets☆427Feb 4, 2026Updated last month
- Community-provided extensions to Seurat☆358Feb 17, 2026Updated last month
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 3 months ago
- An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…☆113Feb 6, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Dec 18, 2024Updated last year
- A package to help convert different single-cell data formats to each other☆460Feb 20, 2026Updated last month
- Simplify functional enrichment results☆124Jan 30, 2026Updated last month
- R package for detecting doublets in single-cell RNA sequencing data☆533Mar 21, 2025Updated last year
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆122Mar 18, 2026Updated last week
- Fast Wilcoxon and auROC☆206Nov 8, 2024Updated last year
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Apr 16, 2025Updated 11 months ago
- NicheNet: predict active ligand-target links between interacting cells☆630Nov 12, 2025Updated 4 months ago
- Methods for detecting doublets in single-cell sequencing data☆233Feb 12, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 3 months ago
- Various utility functions for Seurat v5 single-cell analysis☆64Updated this week
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆17Dec 18, 2024Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆221Mar 8, 2026Updated 2 weeks ago
- Harvard FAS informatics scRNAseq workshop website☆39Aug 8, 2019Updated 6 years ago
- ☆64Mar 18, 2025Updated last year
- TRAjectory-based Differential Expression analysis for SEQuencing data☆293Jun 17, 2025Updated 9 months ago
- Interactively analyze single cell genomic data☆186Jan 14, 2026Updated 2 months ago
- Create anatograms using ggplot2☆403Aug 7, 2025Updated 7 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆331Jul 28, 2020Updated 5 years ago
- ☆72May 28, 2025Updated 9 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆141Mar 13, 2026Updated last week
- AUCell: score single cells with gene regulatory networks☆190Mar 9, 2024Updated 2 years ago
- Multi-Omics Factor Analysis☆388Feb 23, 2026Updated last month
- R/shiny interface for interactive visualization of data in SummarizedExperiment objects☆230Jan 14, 2026Updated 2 months ago
- R toolkit for single cell genomics☆2,689Updated this week