Alternatives and similar repositories for tidyseurat:

Users that are interested in tidyseurat are comparing it to the libraries listed below

• stemangiola / tidybulk
  Brings bulk and pseudobulk transcriptomics to the tidyverse
  ☆170Updated last month
• egeulgen / pathfindR
  pathfindR: Enrichment Analysis Utilizing Active Subnetworks
  ☆186Updated 2 weeks ago
• GabrielHoffman / variancePartition
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆62Updated 2 months ago
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆119Updated 4 years ago
• OSCA-source / OSCA
  The package wrapping the book, for deployment via the Bioconductor build system.
  ☆83Updated 4 months ago
• Bioconductor / Contributions
  Contribute Packages to Bioconductor
  ☆136Updated last month
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆181Updated last month
• DillonHammill / CytoExploreR
  Interactive Cytometry Data Analysis
  ☆65Updated 3 weeks ago
• igordot / msigdbr
  MSigDB gene sets for multiple organisms in a tidy data format
  ☆72Updated this week
• ShixiangWang / sigminer
  🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…
  ☆150Updated 5 months ago
• MangiolaLaboratory / sccomp
  Mixed-effect model to test differences in cell type proportions from single-cell data, in R
  ☆99Updated this week
• Bioconductor / CSAMA
  Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
  ☆92Updated 8 months ago
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆229Updated this week
• wjawaid / enrichR
  An R interface to enrichR
  ☆90Updated last month
• dtm2451 / dittoSeq
  Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
  ☆197Updated 5 months ago
• const-ae / glmGamPoi
  Fit Gamma-Poisson Generalized Linear Models Reliably
  ☆110Updated last month
• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆239Updated this week
• hbctraining / Intro-to-R-flipped
  ☆79Updated 3 weeks ago
• YuLab-SMU / aplot
  Decorate a plot with associated information
  ☆103Updated 2 weeks ago
• zdebruine / RcppML
  Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more
  ☆106Updated last year
• rcastelo / GSVA
  Gene set variation analysis
  ☆210Updated last week
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆113Updated 6 months ago
• alanocallaghan / scater
  Clone of the Bioconductor repository for the scater package.
  ☆95Updated this week
• raivokolde / pheatmap
  Pretty heatmaps
  ☆247Updated last year
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆163Updated 2 years ago
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆190Updated last year
• jokergoo / InteractiveComplexHeatmap
  Make Interactive Complex Heatmaps
  ☆133Updated last year
• stemangiola / CuratedAtlasQueryR
  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
  ☆90Updated 2 months ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomcis ecosystem
  ☆64Updated last year
• tidyomics / plyranges
  A grammar of genomic data transformation
  ☆143Updated 3 months ago