KnowEnG / SequencEnG
An interactive learning resource for next-generation sequencing (NGS) techniques
☆28Updated 6 years ago
Alternatives and similar repositories for SequencEnG:
Users that are interested in SequencEnG are comparing it to the libraries listed below
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 8 months ago
- Long read to rMATS☆31Updated last year
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Repository for the Anczukow-Lab splicing pipeline☆14Updated 3 weeks ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated last week
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated 3 months ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- ☆29Updated 5 years ago
- ☆18Updated 6 years ago
- CADD-SV – a framework to score the effect of structural variants☆14Updated last month
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 11 months ago
- ☆28Updated 3 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- ☆33Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 8 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 9 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago