ACTIONet single-cell analysis framework
☆47Aug 28, 2026Updated last week
Alternatives and similar repositories for ACTIONet
Users that are interested in ACTIONet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆47Sep 3, 2025Updated last year
- Functions for handling RNA-seq files and formats as input and output for scrattch functions.☆11Aug 20, 2025Updated last year
- Hierarchical Cell Annotation☆32Nov 17, 2024Updated last year
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 5 years ago
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆13Mar 13, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆157Feb 6, 2025Updated last year
- R package for pathway analysis in scRNA-seq data☆82Aug 17, 2024Updated 2 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- A benchmark on predicting how small molecules change gene expression in different cell types.☆18Jul 4, 2025Updated last year
- Feature selection for preserving biological trajectories in single-cell data☆21Jun 24, 2026Updated 2 months ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma☆13Jun 4, 2023Updated 3 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆23Aug 17, 2026Updated 3 weeks ago
- ☆10Apr 28, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- An R package to infer cell-cell interactions and clinical values in tumor immune microenvironment through gene pairs.☆26Jun 28, 2024Updated 2 years ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆37Oct 7, 2024Updated last year
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆443Aug 12, 2026Updated 3 weeks ago
- Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data☆29Feb 4, 2017Updated 9 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 4 years ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated 2 years ago
- ☆13Oct 2, 2019Updated 6 years ago
- Single-cell disease relevance score (scDRS)☆195Aug 27, 2026Updated last week
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆15Sep 26, 2017Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆127Oct 31, 2025Updated 10 months ago
- Simplify functional enrichment results☆128Jan 30, 2026Updated 7 months ago
- R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)☆36Dec 30, 2024Updated last year
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 4 years ago
- ☆23May 21, 2026Updated 3 months ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated 2 years ago
- Count HLA alleles in single-cell RNA-seq data☆64Nov 5, 2021Updated 4 years ago
- This is the alpha version of the CellOracle package☆491Apr 30, 2026Updated 4 months ago
- ☆11Jul 9, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆509Jul 26, 2026Updated last month
- detecting spatial patterns of allele-specific expression☆11May 22, 2024Updated 2 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆60Mar 20, 2026Updated 5 months ago
- Differential Robust PCA☆12Jul 10, 2022Updated 4 years ago
- Network Reverse Engineering through AP inference of Mutual Information☆90Mar 6, 2023Updated 3 years ago
- A package for automated processing of single cell RNA-seq data in cancer☆117Aug 27, 2025Updated last year
- ☆13Jul 31, 2025Updated last year