☆17Oct 3, 2022Updated 3 years ago
Alternatives and similar repositories for multisubjectDSanalysis
Users that are interested in multisubjectDSanalysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Exon-Intron Split Analysis (EISA) in R☆17Apr 29, 2026Updated 2 months ago
- A developed pipeline for expressed endogenous retrovirus identification.☆17Oct 9, 2024Updated last year
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 4 years ago
- Browser extension for accessing open data resources in the biomedical domain☆11Jan 8, 2023Updated 3 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Generate signature matrix from single cell data.☆12Apr 13, 2021Updated 5 years ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Jun 20, 2023Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- Calibrated clustering via knockoffs for single-cell genomics☆11Feb 13, 2025Updated last year
- ☆13Dec 14, 2023Updated 2 years ago
- Integrating zingeR with ZINB-WaVE weights☆26Feb 15, 2018Updated 8 years ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 3 years ago
- ☆27May 16, 2025Updated last year
- an R package collection for topological data analysis☆17Apr 16, 2026Updated 2 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 6 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆39Nov 12, 2025Updated 7 months ago
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆20Jun 16, 2022Updated 4 years ago
- Build predicted cell-cell interaction networks from single-cell data.☆10Jan 31, 2023Updated 3 years ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Functions for handling RNA-seq files and formats as input and output for scrattch functions.☆11Aug 20, 2025Updated 10 months ago
- The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.☆36Oct 7, 2024Updated last year
- Brendan's skeleton scRNAseq workflow using scran, Seurat, and scClustViz☆11Apr 22, 2020Updated 6 years ago
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆12Sep 25, 2017Updated 8 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- API for herding data submissions☆13Jun 18, 2026Updated last week
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Sep 26, 2024Updated last year
- ☆16Nov 5, 2021Updated 4 years ago
- Manage Files Across Sessions☆14Apr 29, 2026Updated 2 months ago
- Analysis code and results for dreamlet☆11Apr 16, 2026Updated 2 months ago
- Find lines across files by regex and edit them all at once with your $EDITOR☆72Jun 19, 2026Updated last week
- A set of files to do genomics analysis on python☆19Jun 5, 2025Updated last year
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47May 3, 2023Updated 3 years ago
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆58Nov 28, 2025Updated 7 months ago
- BamDeal: a comprehensive toolkit for bam manipulation☆15Dec 21, 2022Updated 3 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆14Mar 23, 2020Updated 6 years ago
- parallel c prinseq☆21Aug 10, 2022Updated 3 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- ☆85Dec 11, 2023Updated 2 years ago
- A CNN model to identify MEIs in WGS☆13Mar 4, 2025Updated last year