CahanLab / singleCellNet
SingleCellNet: classify single cells across species and platforms
☆131Updated last year
Related projects ⓘ
Alternatives and complementary repositories for singleCellNet
- R package to access DoRothEA's regulons☆133Updated 8 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆123Updated this week
- A tool for detecting somatic variants in single cell data☆170Updated 2 months ago
- Conversion between scRNA-seq objects☆151Updated last week
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆154Updated 9 months ago
- Tools for single-cell data processing☆118Updated 5 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆182Updated 3 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆147Updated 4 months ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆160Updated 5 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆66Updated last year
- A Bayesian model for compositional single-cell data analysis☆150Updated last year
- Episcanpy: Epigenomics Single Cell Analysis in Python☆141Updated last week
- Efficient and precise single-cell reference atlas mapping with Symphony☆100Updated last year
- Automated cell type classification☆106Updated last year
- Multiome GRN inference.☆110Updated 7 months ago
- Methods for detecting doublets in single-cell sequencing data☆164Updated 3 weeks ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆115Updated 6 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆158Updated 3 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆85Updated 3 years ago
- chromatin Variability Across Regions (of the genome!)☆159Updated 4 months ago
- Single Cell Cluster Evaluation☆87Updated 3 years ago
- Publication Page for MPAL Paper 2019☆77Updated 4 years ago
- Multi-sample multi-group scRNA-seq analysis tools☆166Updated last month
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆143Updated last year
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆137Updated this week
- Significance analysis for clustering single-cell RNA-sequencing data☆100Updated 2 months ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated last year
- AUCell: score single cells with gene regulatory networks☆129Updated 8 months ago
- Easy single cell analysis platform for enrichment☆149Updated 2 weeks ago
- ☆108Updated 2 years ago