SingleCellNet: classify single cells across species and platforms
☆141Aug 21, 2023Updated 2 years ago
Alternatives and similar repositories for singleCellNet
Users that are interested in singleCellNet are comparing it to the libraries listed below
Sorting:
- A tool for unsupervised projection of single cell RNA-seq data☆97Nov 24, 2020Updated 5 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆211Jan 9, 2023Updated 3 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆238May 8, 2023Updated 2 years ago
- Automated cell type classification☆116Jan 3, 2025Updated last year
- Interactively analyze single cell genomic data☆185Jan 14, 2026Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆424Feb 4, 2026Updated 3 weeks ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆219Feb 26, 2024Updated 2 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆322Jul 28, 2020Updated 5 years ago
- R package for the inference of cell fate bias from single-cell RNA-seq data.☆22Jun 14, 2022Updated 3 years ago
- Multi-sample multi-group scRNA-seq analysis tools☆218Feb 16, 2026Updated last week
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 2 months ago
- Bench-marking classification tools for scRNA-seq data☆194Jun 9, 2022Updated 3 years ago
- AUCell: score single cells with gene regulatory networks☆185Mar 9, 2024Updated last year
- Clone of the Bioconductor repository for the SingleR package.☆199Updated this week
- R package for detecting doublets in single-cell RNA sequencing data☆525Mar 21, 2025Updated 11 months ago
- Interpretation of cell states using reference single-cell maps☆312Dec 19, 2025Updated 2 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆251Jan 10, 2026Updated last month
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆324Apr 23, 2024Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆313Nov 1, 2022Updated 3 years ago
- CellNet: network biology applied to stem cell engineering☆55May 8, 2023Updated 2 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- A toolkit for single-cell immune profiling☆363Feb 19, 2026Updated last week
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆128Nov 10, 2025Updated 3 months ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆477Apr 5, 2024Updated last year
- This contains the dataset for comparing scRNA-seq analysis methods☆92Aug 26, 2020Updated 5 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆290Jun 17, 2025Updated 8 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Apr 16, 2025Updated 10 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆217Updated this week
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆214Dec 10, 2025Updated 2 months ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆76Jun 30, 2025Updated 8 months ago
- Single Cell Cluster Evaluation☆100Jul 28, 2021Updated 4 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆58Jan 30, 2026Updated last month
- ☆64Mar 18, 2025Updated 11 months ago
- R toolkit for the analysis of single-cell chromatin data☆406Jan 20, 2026Updated last month
- Comparison of methods for trajectory inference on single-cell data 🥇☆220Aug 30, 2023Updated 2 years ago
- Publication Page for MPAL Paper 2019☆83Jun 25, 2020Updated 5 years ago
- Fast Gene Set Enrichment Analysis☆433Jan 2, 2026Updated last month
- scAB detects multiresolution cell states with clinical significance☆20Nov 14, 2022Updated 3 years ago