CahanLab / singleCellNetLinks
SingleCellNet: classify single cells across species and platforms
☆139Updated 2 years ago
Alternatives and similar repositories for singleCellNet
Users that are interested in singleCellNet are comparing it to the libraries listed below
Sorting:
- AUCell: score single cells with gene regulatory networks☆171Updated last year
- R package to access DoRothEA's regulons☆151Updated last year
- Automated cell type classification☆112Updated 9 months ago
- A Shiny web app for mapping datasets using Seurat v4☆134Updated 11 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆207Updated 2 years ago
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆221Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆111Updated 2 years ago
- R package for Pathway RespOnsive GENe activity inference☆109Updated 2 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆78Updated 9 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆168Updated last year
- Multiome GRN inference.☆128Updated last year
- A Bayesian model for compositional single-cell data analysis☆177Updated 2 years ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆159Updated last month
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆113Updated 11 months ago
- ☆70Updated last year
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated 3 weeks ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- chromatin Variability Across Regions (of the genome!)☆181Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆143Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 6 months ago
- ☆47Updated 3 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆168Updated 6 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆210Updated 2 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆117Updated this week
- Single-cell RNA-seq Gene Expression Recovery☆111Updated 10 months ago