CahanLab / singleCellNetLinks
SingleCellNet: classify single cells across species and platforms
☆139Updated 2 years ago
Alternatives and similar repositories for singleCellNet
Users that are interested in singleCellNet are comparing it to the libraries listed below
Sorting:
- R package to access DoRothEA's regulons☆154Updated last year
- Automated cell type classification☆114Updated 11 months ago
- AUCell: score single cells with gene regulatory networks☆174Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆139Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆112Updated last month
- R package for Pathway RespOnsive GENe activity inference☆111Updated 2 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆209Updated 2 years ago
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆117Updated last month
- A Bayesian model for compositional single-cell data analysis☆183Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- Multiome GRN inference.☆131Updated last year
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆160Updated last month
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆169Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 7 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 10 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated this week
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆114Updated last year
- Signature Analysis and Visualization for Single-Cell RNA-seq☆174Updated last year
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- A docker image for single-cell analysis☆101Updated last month
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆123Updated 7 months ago
- A package for automated processing of single cell RNA-seq data in cancer☆114Updated 3 months ago
- R package for semi-supervised single-cell data integration☆90Updated 3 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆70Updated 4 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆142Updated last year
- Clonotype Neighbor Graph Analysis☆92Updated 3 months ago