CahanLab / singleCellNet
SingleCellNet: classify single cells across species and platforms
☆135Updated last year
Alternatives and similar repositories for singleCellNet:
Users that are interested in singleCellNet are comparing it to the libraries listed below
- R package to access DoRothEA's regulons☆142Updated 11 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆158Updated last year
- A Bayesian model for compositional single-cell data analysis☆156Updated last year
- Multiome GRN inference.☆117Updated 10 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆138Updated last month
- LIANA: a LIgand-receptor ANalysis frAmework☆192Updated 6 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆223Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆154Updated 7 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆199Updated 2 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆102Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆165Updated 7 months ago
- Conversion between scRNA-seq objects☆159Updated 2 months ago
- software to detect doublets☆88Updated last month
- Single Cell Cluster Evaluation☆91Updated 3 years ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆122Updated 3 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆142Updated 2 months ago
- reticulate-free single cell format conversion☆124Updated 2 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆99Updated 11 months ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆164Updated 8 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆177Updated last week
- Automated cell type classification☆110Updated last month
- Methods for detecting doublets in single-cell sequencing data☆181Updated this week
- Gene set scoring for single-cell data☆143Updated 3 months ago
- AUCell: score single cells with gene regulatory networks☆143Updated 11 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆68Updated 3 weeks ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆118Updated last week
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆121Updated this week
- A tool for detecting somatic variants in single cell data☆189Updated 5 months ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆135Updated 10 months ago
- scDIOR: Single cell data IO softwaRe☆139Updated 3 years ago