CahanLab / singleCellNetLinks
SingleCellNet: classify single cells across species and platforms
☆140Updated 2 years ago
Alternatives and similar repositories for singleCellNet
Users that are interested in singleCellNet are comparing it to the libraries listed below
Sorting:
- R package to access DoRothEA's regulons☆154Updated last year
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆169Updated 2 years ago
- Automated cell type classification☆116Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- Single Cell Cluster Evaluation☆99Updated 4 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆143Updated last year
- R package for Pathway RespOnsive GENe activity inference☆114Updated 3 years ago
- AUCell: score single cells with gene regulatory networks☆182Updated last year
- Clonotype Neighbor Graph Analysis☆94Updated 5 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆81Updated last year
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆161Updated last week
- Efficient and precise single-cell reference atlas mapping with Symphony☆113Updated 3 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆210Updated 3 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆72Updated 4 years ago
- ☆46Updated 3 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆114Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆144Updated last year
- software to detect doublets☆96Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 9 months ago
- Spatial transcriptomics of heart tissue☆107Updated 2 years ago
- Multiome GRN inference.☆133Updated last year
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆120Updated 3 months ago
- A Bayesian model for compositional single-cell data analysis☆187Updated 3 weeks ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆104Updated last month
- Single-cell RNA-seq Gene Expression Recovery☆114Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆230Updated last year
- Metacell - Single-cell mRNA Analysis☆118Updated last year