Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
☆10Mar 13, 2021Updated 5 years ago
Alternatives and similar repositories for CITE-seq_optimization
Users that are interested in CITE-seq_optimization are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CiteFuse:☆29Feb 7, 2023Updated 3 years ago
- Normalize CITEseq Data☆73Nov 9, 2025Updated 11 months ago
- ☆19May 5, 2020Updated 6 years ago
- ☆13Jan 15, 2021Updated 5 years ago
- MultiModal Classifier Hierarchy (MMoCHi)☆13Oct 2, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆12Oct 31, 2018Updated 7 years ago
- A computational framework☆20Jul 23, 2026Updated 3 months ago
- This repository contains all analysis scripts used to explore single cell datasets for: Jardine and Webb et al., 2021, "Blood and immune …☆14May 4, 2022Updated 4 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆19Oct 5, 2026Updated 3 weeks ago
- R package for Bioconductor submission☆41Dec 8, 2022Updated 3 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated 2 years ago
- An R package for multi-dimensional pathway enrichment analysis☆18Jan 8, 2026Updated 9 months ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆16May 4, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Novel joint clustering method with scRNA-seq and CITE-seq data☆11Jun 22, 2021Updated 5 years ago
- ☆20Mar 28, 2017Updated 9 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 6 months ago
- ☆20Sep 13, 2022Updated 4 years ago
- Helper Functions for LIBD Deconvolution☆11Sep 25, 2026Updated last month
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 8 years ago
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 8 months ago
- clustering method for single-cell transcriptomics data☆11Oct 11, 2026Updated 2 weeks ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆19Mar 27, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆43Nov 18, 2021Updated 4 years ago
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 3 years ago
- GEO RNA-seq Experiments Processing Pipeline☆23Oct 25, 2019Updated 7 years ago
- ☆10Mar 12, 2023Updated 3 years ago
- Spatial Omics Structure Analysis (sosta)☆10Sep 18, 2026Updated last month
- This is a read-only mirror of the CRAN R package repository. SNFtool — Similarity Network Fusion☆24Jun 11, 2021Updated 5 years ago
- scRNA-seq workshop in Oxford on 9 September 2016☆11Sep 7, 2016Updated 10 years ago
- Iteratively Adjusted Surrogate Variable Analysis☆10Aug 23, 2021Updated 5 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆23Oct 8, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- An R package that integrates the installation, execution, and benchmark of cutting-edge computational doublet-detection methods.☆12Dec 4, 2022Updated 3 years ago
- ☆15Jul 8, 2022Updated 4 years ago
- Co-expression network management based on WGCNA + k-means☆22May 11, 2021Updated 5 years ago
- R package for specialised analysis of single cell data☆42Oct 14, 2022Updated 4 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆11Feb 19, 2024Updated 2 years ago
- ☆23Jun 5, 2021Updated 5 years ago
- An R package for the analysis and interpretation of cell migration tracks.☆15Sep 19, 2025Updated last year