Terkild / CITE-seq_optimization
Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
☆9Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for CITE-seq_optimization
- Efficiently compute robust markers across single-cell datasets☆11Updated 3 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆10Updated last year
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 4 years ago
- ☆14Updated 2 years ago
- ☆12Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆10Updated 3 weeks ago
- Identify Intra-, Inter-donor variations in bulk or single cell longitudinal dataset☆17Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 3 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated last year
- R interface to megadepth: BigWig and BAM related utilities☆11Updated 6 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Gene Expression Decomposition and Integration☆15Updated 3 months ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 4 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆11Updated 3 months ago
- A gene expression signature scoring Python package.☆10Updated last year
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆17Updated 3 weeks ago
- ☆14Updated 5 years ago
- ☆11Updated 5 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆21Updated last year
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆15Updated 2 years ago
- R package for Flexible dot plots☆26Updated 2 years ago
- Gene-level general linear mixed model☆18Updated 2 months ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated last week