Collection of cell type reference datasets.
☆68May 31, 2024Updated 2 years ago
Alternatives and similar repositories for celldex
Users that are interested in celldex are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Clone of the Bioconductor repository for the SingleR package.☆204Sep 10, 2026Updated last week
- ☆28May 16, 2025Updated last year
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 7 months ago
- R package for Bioconductor submission☆41Dec 8, 2022Updated 3 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆99Mar 18, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆49Sep 18, 2025Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆347Jul 28, 2020Updated 6 years ago
- The blog of tidyomics☆13Jul 12, 2025Updated last year
- ☆17Sep 13, 2024Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆100Nov 24, 2020Updated 5 years ago
- Advanced steps of the OSCA book☆16Aug 26, 2026Updated 3 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆343Nov 1, 2022Updated 3 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆126May 24, 2026Updated 3 months ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆126Nov 10, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package for SIGMA, a clusterability measure for scRNA-seq data☆13Dec 15, 2021Updated 4 years ago
- scDataviz: single cell dataviz and downstream analyses☆68Sep 24, 2021Updated 4 years ago
- A toolkit for single-cell immune profiling☆376Aug 14, 2026Updated last month
- Fast Wilcoxon and auROC☆218Updated this week
- R package for detecting doublets in single-cell RNA sequencing data☆565Mar 21, 2025Updated last year
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Easy single cell analysis platform for enrichment☆234Aug 9, 2026Updated last month
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆78Feb 27, 2023Updated 3 years ago
- Scaling Single Cell Analysis to Millions of Cells☆305Jul 13, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆13Nov 13, 2018Updated 7 years ago
- ☆78Aug 21, 2023Updated 3 years ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 11 months ago
- ☆68Sep 13, 2024Updated 2 years ago
- ☆36Sep 7, 2026Updated 2 weeks ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆18Jun 28, 2025Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- Extension of SpatialExperiment with sf☆58May 6, 2026Updated 4 months ago
- Interpretation of cell states using reference single-cell maps☆325Dec 19, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- NicheNet: predict active ligand-target links between interacting cells☆679Jun 1, 2026Updated 3 months ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 9 months ago
- Reference mapping for single-cell genomics☆410Jun 26, 2026Updated 2 months ago
- Seurat meets tidyverse. The best of both worlds.☆166Mar 3, 2026Updated 6 months ago
- Pairwise Hierarchical Model☆21Mar 11, 2022Updated 4 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆266Jul 8, 2026Updated 2 months ago
- A Shiny web app for mapping datasets using Seurat v4☆151May 22, 2026Updated 3 months ago