Collection of cell type reference datasets.
☆64May 31, 2024Updated last year
Alternatives and similar repositories for celldex
Users that are interested in celldex are comparing it to the libraries listed below
Sorting:
- Clone of the Bioconductor repository for the SingleR package.☆199Updated this week
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆99Mar 18, 2023Updated 2 years ago
- R package for Bioconductor submission☆38Dec 8, 2022Updated 3 years ago
- ☆26May 16, 2025Updated 9 months ago
- ☆16Sep 13, 2024Updated last year
- R package to visualize gene expression data based on weighted kernel density estimation☆112Feb 6, 2026Updated 3 weeks ago
- Analysis code and results for dreamlet☆11Jul 18, 2025Updated 7 months ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆48Sep 18, 2025Updated 5 months ago
- ☆63Sep 13, 2024Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆323Jul 28, 2020Updated 5 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆113Oct 31, 2025Updated 4 months ago
- Manage Files Across Sessions☆13Oct 30, 2025Updated 4 months ago
- scDataviz: single cell dataviz and downstream analyses☆66Sep 24, 2021Updated 4 years ago
- Fast Wilcoxon and auROC☆204Nov 8, 2024Updated last year
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆128Nov 10, 2025Updated 3 months ago
- Single cell proteomics data processing☆30Feb 9, 2026Updated 2 weeks ago
- Advanced steps of the OSCA book☆14Nov 19, 2025Updated 3 months ago
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- Brendan's skeleton scRNAseq workflow using scran, Seurat, and scClustViz☆11Apr 22, 2020Updated 5 years ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 4 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆313Nov 1, 2022Updated 3 years ago
- software to detect doublets☆96Dec 28, 2024Updated last year
- Easy single cell analysis platform for enrichment☆215Jan 4, 2026Updated last month
- Extension of SpatialExperiment with sf☆57Feb 19, 2026Updated last week
- ☆13Nov 13, 2018Updated 7 years ago
- ☆17Sep 28, 2022Updated 3 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆97Nov 24, 2020Updated 5 years ago
- Seurat meets tidyverse. The best of both worlds.☆162Updated this week
- A Shiny web app for mapping datasets using Seurat v4☆144Nov 5, 2024Updated last year
- R package for detecting doublets in single-cell RNA sequencing data☆525Mar 21, 2025Updated 11 months ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Dec 15, 2021Updated 4 years ago
- The blog of tidyomics☆14Jul 12, 2025Updated 7 months ago
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 3 years ago
- Reference mapping for single-cell genomics☆399Dec 2, 2025Updated 2 months ago
- Interfaces for HDF5-based Single Cell File Formats☆174Nov 4, 2023Updated 2 years ago
- NicheNet: predict active ligand-target links between interacting cells☆620Nov 12, 2025Updated 3 months ago
- An R-based interface for loom files☆67Jul 9, 2020Updated 5 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Oct 10, 2025Updated 4 months ago