Alternatives and similar repositories for CaSTLe

Users that are interested in CaSTLe are comparing it to the libraries listed below

• liuqivandy / scRNABatchQC
  ☆13Updated 4 years ago
• yeminlan / ADEpigenetics
  Main codes for AD epigenetics paper by Nativio et al.
  ☆11Updated 6 years ago
• BaderLab / AgingMouseBrainCCInx
  Predicted cell-cell interactions of the aging mouse brain
  ☆20Updated 6 years ago
• mruffalo / sc-rna-seq-pipeline
  ☆22Updated 6 years ago
• yanailab / moana
  Moana: Robust cell type classification of single-cell RNA-Seq data
  ☆24Updated 7 years ago
• BIMSBbioinfo / netSmooth
  netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
  ☆28Updated last year
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated last week
• BIRSBiointegration / Hackathon
  Multi-omics studies are available here
  ☆52Updated 3 years ago
• SydneyBioX / scMerge
  Statistical approach for removing unwanted variation from multiple single-cell datasets
  ☆70Updated last year
• cole-trapnell-lab / cicero
  ☆12Updated 2 years ago
• kendomaniac / rCASC
  rCASC: reproducible Classification Analysis of Single Cell Sequencing Data
  ☆15Updated 9 months ago
• haniffalab / Single-cell-RNAseq-data-analysis-bundle
  ☆12Updated 3 years ago
• jdime / scRNAseq_cell_cluster_labeling
  Scripts to run and benchmark scRNA-seq cell cluster labeling methods
  ☆48Updated 5 years ago
• czbiohub-sf / tabula-muris-vignettes
  Examples analyses using the single-cell RNA-seq data from mouse cell atlases
  ☆22Updated 6 years ago
• normjam / benchmark
  Comparison of single-cell normalization methods using multiple datasets with ground-truth labels
  ☆19Updated 6 years ago
• JinmiaoChenLab / cytofkit
  cytofkit: an integrated flow/mass cytometry data analysis pipeline
  ☆60Updated 5 years ago
• NikolayOskolkov / NormalizeSingleCell
  Comparison of single cell normalization strategies
  ☆10Updated 4 years ago
• vals / Blog
  ☆38Updated 3 weeks ago
• Oshlack / splatter-paper
  Data and analysis for the Splatter paper
  ☆29Updated 8 years ago
• PYangLab / Cepo
  Uncovering cell identity genes using differential stability of expression in single cells.
  ☆12Updated last year
• wkl1990 / Illumina450K-methylation
  From IDAT to beta.
  ☆25Updated 7 years ago
• praneet1988 / ELeFHAnt
  Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clu…
  ☆23Updated 3 years ago
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆38Updated 4 years ago
• OSU-BMBL / scread-protocol
  ☆18Updated 3 years ago
• hhcho / netsne
  ☆21Updated 7 years ago
• BaderLab / scClustViz
  Explore and share your scRNAseq clustering results
  ☆50Updated 2 years ago
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆45Updated last year
• DeplanckeLab / ASAP
  ASAP : Automated Single-cell Analysis Pipeline
  ☆27Updated 8 months ago
• LTLA / scRNAseq
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆29Updated 4 months ago
• schillerlab / sc-toolbox
  A collection of project templates and useful functions for single-cell data analysis with Scanpy.
  ☆21Updated 2 years ago