Alternatives and similar repositories for CaSTLe

Users that are interested in CaSTLe are comparing it to the libraries listed below

• liuqivandy / scRNABatchQC
  ☆12Updated 4 years ago
• yanailab / moana
  Moana: Robust cell type classification of single-cell RNA-Seq data
  ☆24Updated 6 years ago
• BaderLab / AgingMouseBrainCCInx
  Predicted cell-cell interactions of the aging mouse brain
  ☆20Updated 5 years ago
• BIMSBbioinfo / netSmooth
  netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
  ☆27Updated last year
• jdime / scRNAseq_cell_cluster_labeling
  Scripts to run and benchmark scRNA-seq cell cluster labeling methods
  ☆47Updated 5 years ago
• Teichlab / cellity
  ☆37Updated 8 years ago
• mruffalo / sc-rna-seq-pipeline
  ☆22Updated 5 years ago
• dcroote / singlecell-ige
  Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)
  ☆10Updated 3 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 2 years ago
• SydneyBioX / scMerge
  Statistical approach for removing unwanted variation from multiple single-cell datasets
  ☆67Updated last year
• lmweber / Rtsne-example
  Short example showing how to calculate and plot a 2D t-SNE projection from mass cytometry data in R
  ☆17Updated 9 years ago
• cole-trapnell-lab / cicero
  ☆12Updated last year
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆38Updated 3 years ago
• KChen-lab / SCMER
  Marker Selection by matching manifolds and elastic net
  ☆23Updated 8 months ago
• yeminlan / ADEpigenetics
  Main codes for AD epigenetics paper by Nativio et al.
  ☆11Updated 5 years ago
• KenLauLab / dropkick
  Automated cell filtering for single-cell RNA sequencing data
  ☆24Updated last year
• NikolayOskolkov / NormalizeSingleCell
  Comparison of single cell normalization strategies
  ☆10Updated 3 years ago
• khodosevichlab / CellAnnotatoR
  Automated marker-based annotation of cell types
  ☆13Updated 2 years ago
• GregorySchwartz / tooManyCellsR
  An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.
  ☆25Updated 5 years ago
• kendomaniac / rCASC
  rCASC: reproducible Classification Analysis of Single Cell Sequencing Data
  ☆13Updated 2 months ago
• OSU-BMBL / scread-protocol
  ☆16Updated 2 years ago
• Oshlack / splatter-paper
  Data and analysis for the Splatter paper
  ☆29Updated 7 years ago
• czbiohub-sf / tabula-muris-vignettes
  Examples analyses using the single-cell RNA-seq data from mouse cell atlases
  ☆23Updated 5 years ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated 3 weeks ago
• bioturing / signac
  An analytics package for single cell data
  ☆22Updated 3 years ago
• montilab / BS831
  Course Materials for Genomics Data Mining
  ☆22Updated 3 weeks ago
• combiz / scFlow
  Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.
  ☆56Updated last year
• epurdom / clusterExperiment
  R package of techniques for comparing clusterings of single-cell sequencing data
  ☆38Updated last year
• SpatialTranscriptomicsResearch / st_viewer
  A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets
  ☆14Updated 4 years ago
• haniffalab / Single-cell-RNAseq-data-analysis-bundle
  ☆12Updated 3 years ago