yigbt / multiGSEA
The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
☆17Updated last month
Alternatives and similar repositories for multiGSEA:
Users that are interested in multiGSEA are comparing it to the libraries listed below
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 6 months ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆13Updated last year
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆18Updated 5 years ago
- Personalized prioritization of driver genes in cancer☆9Updated 2 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated last year
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆19Updated 3 months ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 2 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆14Updated 5 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- Explore the cancer relevance of your gene list☆49Updated 5 months ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Updated 5 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Comprehensive Human Expressed SequenceS☆16Updated 6 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 5 years ago
- SCASA: Single cell transcript quantification tool☆20Updated last year
- A set of tools for accurate quantitation of single-cell allele-specific expression☆12Updated 2 years ago
- Co-expression network management based on WGCNA + k-means☆18Updated 3 years ago
- ☆13Updated 6 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- R package for Flexible dot plots☆29Updated 2 years ago
- Gene Expression Decomposition and Integration☆17Updated this week
- ☆22Updated 2 years ago
- Repository for supplemental material of manuscripts☆18Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago