The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
☆22May 4, 2026Updated last month
Alternatives and similar repositories for multiGSEA
Users that are interested in multiGSEA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- ☆29Mar 16, 2023Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆69Jun 4, 2026Updated 3 weeks ago
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 4 years ago
- PhosR is a package for the comprehensive analysis of phosphoproteomic data.☆20Jun 8, 2026Updated 3 weeks ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- An R interface to the MEME Suite☆54Jan 7, 2026Updated 5 months ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Dec 13, 2024Updated last year
- ☆12Jun 16, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- TQSLE v1.0 released☆10Aug 29, 2023Updated 2 years ago
- Single sample pathway analysis tools for omics data☆15Nov 9, 2024Updated last year
- Core Utils for Mass Spectrometry Data☆17May 11, 2026Updated last month
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 6 months ago
- ☆11May 12, 2026Updated last month
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated last year
- A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis☆21Feb 14, 2024Updated 2 years ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆13Mar 7, 2023Updated 3 years ago
- Candidate Drivers Analysis: Multi-Omic Search for Candidate Drivers of Functional Signatures☆24Oct 13, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.☆11Oct 5, 2023Updated 2 years ago
- Ultra Fast NGS Data QC Tool☆28Feb 14, 2021Updated 5 years ago
- This is the ensembldb development repository.☆36Jun 6, 2026Updated 3 weeks ago
- Function Enrichment analysis and Network construction☆15Apr 25, 2026Updated 2 months ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Aug 22, 2022Updated 3 years ago
- An Interactive Consensus Clustering framework for Cross-platform data analysis☆14Jan 28, 2022Updated 4 years ago
- Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool☆10Jun 10, 2026Updated 3 weeks ago
- R package for plotting 3D graphical visualization of multi-omics data.☆27Mar 16, 2022Updated 4 years ago
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17Jan 13, 2024Updated 2 years ago
- An R package for multi-dimensional pathway enrichment analysis☆18Jan 8, 2026Updated 5 months ago
- Temporal Development of the Gut Microbiome in Early Childhood - The TEDDY Study☆11Jul 13, 2018Updated 7 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 3 years ago
- A repository of Python tips for common data science tasks, including dataset unit testing and machine learning development for production☆34Apr 10, 2022Updated 4 years ago
- HiDeF (Hierarchical community Decoding Framework)☆15Jan 30, 2024Updated 2 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Jun 3, 2021Updated 5 years ago