The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
☆23May 4, 2026Updated 5 months ago
Alternatives and similar repositories for multiGSEA
Users that are interested in multiGSEA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- R functions underlying OmicsNet☆21Oct 20, 2026Updated last week
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆71Sep 3, 2026Updated last month
- ☆30Mar 16, 2023Updated 3 years ago
- Spending less time on SDRF creates more time for amazing research☆10Oct 15, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 5 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 4 years ago
- R implementation of integration metrics for single-cell data☆14Sep 23, 2026Updated last month
- TQSLE v1.0 released☆10Aug 29, 2023Updated 3 years ago
- PhosR is a package for the comprehensive analysis of phosphoproteomic data.☆22Jun 8, 2026Updated 4 months ago
- A GenePattern module for running the ssGSEA method☆17Mar 3, 2025Updated last year
- Transcript specific RNA splicing events lookup☆10Jun 22, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Oct 30, 2025Updated last year
- ☆10Nov 5, 2023Updated 2 years ago
- A pipeline to generate a Deep Nerual Network cell type deconvolution model for bulk RNASeq samples from single cell experiment data☆12Nov 17, 2020Updated 5 years ago
- Function Enrichment analysis and Network construction☆16Updated this week
- A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis☆22Feb 14, 2024Updated 2 years ago
- Layered enrichment analysis tool enables facile enrichment using various statistics at once.☆20Jun 10, 2026Updated 4 months ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 6 years ago
- R package for plotting 3D graphical visualization of multi-omics data.☆27Mar 16, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Design tool for highly performant qPCR diagnostics.☆12Updated this week
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆20Dec 8, 2020Updated 5 years ago
- An R package for multi-dimensional pathway enrichment analysis☆18Jan 8, 2026Updated 9 months ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- ProStruc: A Python-based Tool for Homology Modeling and 3D Structure Prediction☆11Oct 31, 2024Updated last year
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆13Updated this week
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- pathway based data integration and visualization☆52Mar 28, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Automatic annotation of single-cell RNA-seq data from the literature☆48Jul 20, 2025Updated last year
- An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment)☆10Oct 25, 2021Updated 5 years ago
- PathIntegrate Python package for pathway-based multi-omics data integration☆19Nov 9, 2024Updated last year
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆20Feb 23, 2026Updated 8 months ago
- Generate signature matrix from single cell data.☆12Apr 13, 2021Updated 5 years ago
- ☆12Jun 16, 2023Updated 3 years ago
- MSConnect is a Web-based integrated plateform to combine data storage/backup, process and visualization of MS-based Proteomics data.☆20Aug 19, 2025Updated last year