dawe / schistLinks
An interface for Nested Stochastic Block Model for single cell analysis
☆36Updated last month
Alternatives and similar repositories for schist
Users that are interested in schist are comparing it to the libraries listed below
Sorting:
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- A toolking for cell type hierarchies: marker selection & consistent classification☆22Updated last year
- ☆22Updated 3 years ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- A python package for chromVAR☆29Updated 2 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- ☆29Updated 2 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 2 months ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆50Updated last year
- ☆35Updated 5 months ago
- Geometry-preserving random sampling☆89Updated 9 months ago
- NetworkCommons is a community-driven platform designed to simplify access to tools and resources for inferring context-specific protein i…☆25Updated last month
- Multi-omics factor analysis v2☆48Updated 10 months ago
- post-clustering differential expression test☆35Updated 6 years ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago
- Deep exponential families for single-cell data.☆20Updated 9 months ago
- ☆31Updated 4 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆26Updated 7 months ago
- High-definition modeling of chromatin + transcriptomics data☆24Updated 4 months ago
- Single Cell Epigenome-based Inference of Activity☆19Updated last year
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- ☆44Updated 9 months ago