ncbi / JUDILinks
This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many parameter settings. Bioinformatics pipeline: Just Do It!
☆33Updated 3 years ago
Alternatives and similar repositories for JUDI
Users that are interested in JUDI are comparing it to the libraries listed below
Sorting:
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- Genomic VCF to tab-separated values☆48Updated 2 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- A Github action for running a Snakemake workflow☆61Updated last week
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Updated 6 years ago
- Variant catalogue pipeline☆26Updated 6 months ago
- Master of Pores 2☆23Updated 11 months ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 11 months ago
- Personal diploid genome creation and coordinate conversion☆30Updated 7 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- A collection of modules and sub-workflows for Nextflow☆28Updated 3 weeks ago
- deploy a snakemake pipeline directly from version control (under development)☆23Updated last week
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 4 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 11 months ago
- Website to analyze conflicting assertions in ClinVar☆19Updated last year
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 2 weeks ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 2 months ago