ncbi / JUDILinks
This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many parameter settings. Bioinformatics pipeline: Just Do It!
☆34Updated 3 years ago
Alternatives and similar repositories for JUDI
Users that are interested in JUDI are comparing it to the libraries listed below
Sorting:
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- Demonstrating best practices for bioinformatics command line tools☆26Updated 5 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- Malleable All-seeing Journal Of Research Artifacts☆36Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆24Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- conda recipes for genomic data☆85Updated 4 years ago
- Master of Pores 2☆23Updated 8 months ago
- Genomic VCF to tab-separated values☆47Updated 2 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated 2 months ago
- Variant catalogue pipeline☆25Updated 3 months ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 8 months ago
- A Github action for running a Snakemake workflow☆59Updated 2 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated this week
- Personal diploid genome creation and coordinate conversion☆30Updated 4 months ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 8 months ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 11 months ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago