An R package for multi-dimensional pathway enrichment analysis
☆17Jan 8, 2026Updated 4 months ago
Alternatives and similar repositories for mitch
Users that are interested in mitch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data☆39May 8, 2026Updated 2 weeks ago
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 4 years ago
- Helper script for bioconductor/bioconductor_docker☆13Updated this week
- R Interface to the NCBI SRA metadata☆23Nov 19, 2018Updated 7 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆13Jun 21, 2022Updated 3 years ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Jul 25, 2022Updated 3 years ago
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- distinct: a method for differential analyses via hierarchical permutation tests☆13Dec 4, 2023Updated 2 years ago
- Predicted cell-cell interactions of the aging mouse brain☆21Sep 24, 2019Updated 6 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- Validate FastQ Files☆36Oct 30, 2018Updated 7 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Probabilistic gene expression barcodes for cell type annotation☆27Apr 26, 2022Updated 4 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Mar 2, 2021Updated 5 years ago
- Simulation and data analysis code for dream paper☆12Jun 5, 2020Updated 5 years ago
- ☆11May 30, 2023Updated 2 years ago
- ☆19Mar 8, 2026Updated 2 months ago
- ☆97Apr 18, 2024Updated 2 years ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Jul 12, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for High dimensional data analysis and integration with O2PLS!☆35Jul 18, 2025Updated 10 months ago
- FitDevo: accurate inference of single-cell developmental potential using sample-specific gene weight☆17Apr 7, 2024Updated 2 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆21May 4, 2026Updated 3 weeks ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22May 14, 2026Updated last week
- ☆15May 3, 2024Updated 2 years ago
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated 4 months ago
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- Tidy Tools for Visualizing Mixture Models☆23Jan 6, 2025Updated last year
- A Grammar of Data Manipulation for Omics Data☆21Aug 31, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Multi-sample multi-group scRNA-seq analysis tools☆229Apr 28, 2026Updated 3 weeks ago
- weighted indexes for clustering evaluation☆14Apr 18, 2020Updated 6 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Aug 2, 2023Updated 2 years ago
- Assessing the increase in power from increasing read depth in a given RNA-Seq study☆14May 13, 2019Updated 7 years ago
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 7 years ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆21Nov 27, 2025Updated 5 months ago