markziemann / mitch
An R package for multi-dimensional pathway enrichment analysis
☆16Updated 2 weeks ago
Alternatives and similar repositories for mitch:
Users that are interested in mitch are comparing it to the libraries listed below
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- distinct: a method for differential analyses via hierarchical permutation tests☆11Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 5 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Differential Expression with Capture Efficiency adjustmeNT☆14Updated 2 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆20Updated last year
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 5 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Gene-level general linear mixed model☆21Updated 2 months ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 4 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- countsimQC - Compare characteristic features of count data sets☆27Updated 3 months ago
- Pairwise Hierarchical Model☆17Updated 3 years ago
- Code for EpiMap data browser☆14Updated 10 months ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 3 years ago
- A tidy interface for coverage analysis☆24Updated 5 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 8 months ago
- ☆24Updated 2 years ago
- ☆14Updated 5 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆22Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- Workshop for CNV analysis with Bioconductor☆17Updated 3 months ago
- An R package to analyze single-cell V(D)J data☆24Updated last year