Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
☆47May 3, 2023Updated 3 years ago
Alternatives and similar repositories for MIND
Users that are interested in MIND are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 4 months ago
- Multi-subject Single Cell Deconvolution☆301Mar 4, 2024Updated 2 years ago
- R code to work with the NIH RePORTER API☆11Feb 11, 2026Updated 4 months ago
- Independent Hypothesis Weighting☆17Sep 25, 2023Updated 2 years ago
- ☆10Jun 19, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Primo☆16Sep 2, 2021Updated 4 years ago
- ☆20Feb 17, 2021Updated 5 years ago
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 2 years ago
- ☆14Jul 1, 2025Updated 11 months ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 6 years ago
- A random-forest-based approach for imputing clustered incomplete data☆36May 6, 2017Updated 9 years ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated 11 months ago
- Correlation-based approach for identification of endocrine interactions☆13Jan 18, 2022Updated 4 years ago
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 8 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- Assemble and following pipeline used in wisent genome paper.☆17Dec 23, 2016Updated 9 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Mar 15, 2023Updated 3 years ago
- A public list of computational methods for cell type inference from genome-scale DNA methylation data☆13Mar 26, 2019Updated 7 years ago
- The materials for the Deep Learning in Biology workshop put on by Alex Lee, David Nicholson, and Ben Heil☆14Oct 30, 2020Updated 5 years ago
- ☆17Oct 3, 2022Updated 3 years ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆25Feb 1, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- InstaPrism is an R package for fast implementation of BayesPrism☆57Jun 3, 2024Updated 2 years ago
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 6 years ago
- ☆62Jun 17, 2021Updated 5 years ago
- ☆25Sep 2, 2024Updated last year
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆32Feb 9, 2021Updated 5 years ago
- An R package for testing high-dimensional covariance matrices☆11Oct 5, 2017Updated 8 years ago
- Analytical R Tools for Mass Spectrometry☆14Oct 30, 2025Updated 8 months ago
- Supplementary Code for "Mapping DNA methylation across development, genotype, and schizophrenia in the human frontal cortex"☆12Oct 27, 2015Updated 10 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆181Jun 10, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆20May 20, 2021Updated 5 years ago
- a fully Bayesian approach to deconvolve tumor microenvironment☆61Jun 20, 2022Updated 4 years ago
- A python package for calculating local cell specific networks☆17Nov 17, 2023Updated 2 years ago
- A faster lmm for GWAS. Supports GPU backend.☆15Dec 5, 2018Updated 7 years ago
- Find causal cell-types underlying complex trait genetics☆96Feb 8, 2026Updated 4 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆23Apr 16, 2026Updated 2 months ago
- ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…☆18May 25, 2025Updated last year