Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
☆47May 3, 2023Updated 3 years ago
Alternatives and similar repositories for MIND
Users that are interested in MIND are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-subject Single Cell Deconvolution☆305Mar 4, 2024Updated 2 years ago
- R code to work with the NIH RePORTER API☆11Feb 11, 2026Updated 5 months ago
- Independent Hypothesis Weighting☆17Sep 25, 2023Updated 2 years ago
- ☆10Jun 19, 2026Updated last month
- ☆20Feb 17, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆14Jul 1, 2025Updated last year
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 3 years ago
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 7 years ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 6 years ago
- Gene Expression Decomposition and Integration☆21Feb 9, 2026Updated 6 months ago
- Correlation-based approach for identification of endocrine interactions☆13Jan 18, 2022Updated 4 years ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- SCIPAC (Single- Cell and bulk data-based Identifier for Phenotype Associated Cells) is a computational method that identifies cells in si…☆16Jun 30, 2024Updated 2 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Calculate AUC based on GWAS summary statistics only☆10Jun 29, 2018Updated 8 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Mar 15, 2023Updated 3 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆14Feb 29, 2020Updated 6 years ago
- Assemble and following pipeline used in wisent genome paper.☆17Dec 23, 2016Updated 9 years ago
- A public list of computational methods for cell type inference from genome-scale DNA methylation data☆14Mar 26, 2019Updated 7 years ago
- Difference in Intercellular Communication from scRNA-seq data☆25Oct 14, 2025Updated 9 months ago
- ☆17Oct 3, 2022Updated 3 years ago
- ☆20May 20, 2021Updated 5 years ago
- The materials for the Deep Learning in Biology workshop put on by Alex Lee, David Nicholson, and Ben Heil☆14Oct 30, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆25Feb 1, 2020Updated 6 years ago
- A python package for calculating local cell specific networks☆18Nov 17, 2023Updated 2 years ago
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 7 years ago
- Analytical R Tools for Mass Spectrometry☆14Oct 30, 2025Updated 9 months ago
- ☆62Jun 17, 2021Updated 5 years ago
- An R package for testing high-dimensional covariance matrices☆11Oct 5, 2017Updated 8 years ago
- Supplementary Code for "Mapping DNA methylation across development, genotype, and schizophrenia in the human frontal cortex"☆12Oct 27, 2015Updated 10 years ago
- ☆25Sep 2, 2024Updated last year
- Signature Analysis and Visualization for Single-Cell RNA-seq☆183Jun 10, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆32Feb 9, 2021Updated 5 years ago
- a fully Bayesian approach to deconvolve tumor microenvironment☆61Jun 20, 2022Updated 4 years ago
- Find causal cell-types underlying complex trait genetics☆97Feb 8, 2026Updated 6 months ago
- Unified access to several second-generation deconvolution methods☆110Updated this week
- A faster lmm for GWAS. Supports GPU backend.☆15Dec 5, 2018Updated 7 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆25Apr 16, 2026Updated 3 months ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated 4 months ago