randel / MINDLinks
Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
☆45Updated 2 years ago
Alternatives and similar repositories for MIND
Users that are interested in MIND are comparing it to the libraries listed below
Sorting:
- Identify and correct invalid gene symbols☆58Updated 7 months ago
- Toolkit for Single-Cell Velocity☆56Updated 5 months ago
- An r package that works as a wrapper to homologene☆46Updated last year
- ☆41Updated 4 years ago
- Code used to carry out parameter estimation, correlation estimation, type 1 error analysis, and power analysis for our "Pseudoreplication…☆20Updated 4 years ago
- post-clustering differential expression test☆35Updated 6 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 3 weeks ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- ☆20Updated 11 months ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 11 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆30Updated last month
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆23Updated 5 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆27Updated 5 months ago
- ☆29Updated 2 years ago
- An analytics package for single cell data☆22Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Single-cell analysis with non-negative matrix factorization☆44Updated 8 months ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆43Updated 7 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 3 months ago
- Hierarchical classification of cells☆23Updated 10 months ago