adoostparast / CellR
CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
☆16Updated 3 years ago
Alternatives and similar repositories for CellR:
Users that are interested in CellR are comparing it to the libraries listed below
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 3 years ago
- ☆45Updated 7 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- ☆12Updated 5 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆31Updated last year
- ☆22Updated 2 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 4 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 4 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆11Updated 3 years ago
- ☆12Updated 10 months ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- ☆21Updated 4 months ago
- ☆29Updated last year
- ☆38Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆20Updated 2 years ago
- ☆12Updated 8 months ago
- ☆33Updated 10 months ago
- ☆30Updated last month
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year