CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
☆20May 24, 2021Updated 5 years ago
Alternatives and similar repositories for CellR
Users that are interested in CellR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆16Oct 31, 2024Updated last year
- Generate signature matrix from single cell data.☆12Apr 13, 2021Updated 5 years ago
- Estimate microRNA activity in single cells☆13May 4, 2022Updated 4 years ago
- ☆17Jun 17, 2021Updated 4 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆27Mar 3, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.☆15Jul 16, 2023Updated 2 years ago
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆22Jan 22, 2026Updated 4 months ago
- single cell and bulk RNASeq analysis scripts☆14Jan 13, 2022Updated 4 years ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated 2 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 3 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆21Nov 17, 2024Updated last year
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 3 years ago
- ☆13Feb 16, 2019Updated 7 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆11Mar 10, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- R package for haplotype phasing using single-cell RNA-seq data☆14Aug 22, 2017Updated 8 years ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆41Apr 7, 2026Updated 2 months ago
- Spatial Image Analysis of Tissues☆15Dec 8, 2022Updated 3 years ago
- scRNA-seq data visualization from scrattch☆30Aug 20, 2025Updated 9 months ago
- Single-cell identity definition using random forest modelling and recursive feature elimination☆12Aug 15, 2020Updated 5 years ago
- Small R package with some functions to visualize DGE results downstream of DESeq2☆12Jul 6, 2023Updated 2 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- Info about NIH-IRP Single Cell Users Group events☆12Nov 21, 2023Updated 2 years ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆21Jan 17, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Single Cell Consensus Clustering with Speed☆24Dec 12, 2022Updated 3 years ago
- ☆13Jan 15, 2021Updated 5 years ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Jun 7, 2022Updated 4 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆88Dec 4, 2025Updated 6 months ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Integrating zingeR with ZINB-WaVE weights☆26Feb 15, 2018Updated 8 years ago
- Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.☆28Nov 2, 2021Updated 4 years ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Whole slide image registration through wsireg in napari.☆12Apr 21, 2023Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆33Feb 28, 2022Updated 4 years ago
- This is a web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on …☆15Sep 24, 2019Updated 6 years ago
- RNA seq analysis using Bioconductor (analysis built on limma, edgeR)☆12Sep 23, 2022Updated 3 years ago
- ☆14Nov 27, 2025Updated 6 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Jan 15, 2023Updated 3 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆17Jun 28, 2025Updated 11 months ago