fabilab / northstar
Single cell type annotation guided by cell atlases, with freedom to be queer
☆25Updated 2 years ago
Alternatives and similar repositories for northstar:
Users that are interested in northstar are comparing it to the libraries listed below
- ☆35Updated 3 weeks ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 4 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Signac☆25Updated 2 years ago
- ☆42Updated 5 months ago
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- post-clustering differential expression test☆35Updated 5 years ago
- Using BCR and expression for sequence embedding☆21Updated 3 weeks ago
- ☆11Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆27Updated 3 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- RNA velocity validation☆22Updated 3 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Heterogeneity Induced Pre-Processing tOol☆18Updated 3 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- .h5mu files interface for Seurat☆29Updated last year
- kallisto index tag extractor☆20Updated 5 years ago
- ☆20Updated 8 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 3 years ago
- Multi-study integration of cellular trajectories☆19Updated 4 years ago
- ☆37Updated 8 years ago
- ☆22Updated 4 months ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 4 years ago