Microbial Genome Circular plotting tool for comparative genomics using Circos
☆38Feb 1, 2023Updated 3 years ago
Alternatives and similar repositories for MGCplotter
Users that are interested in MGCplotter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆85May 3, 2025Updated last year
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆108Dec 11, 2023Updated 2 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆93May 3, 2025Updated last year
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆25Apr 10, 2026Updated last month
- Easy-to-use web application for visualization and comparison of genomes in Genbank file☆22May 27, 2022Updated 4 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆44Jul 17, 2020Updated 5 years ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Reorients assembled microbial sequences☆137Updated this week
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆107Jan 22, 2026Updated 4 months ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆17Dec 29, 2022Updated 3 years ago
- ☆11Sep 16, 2020Updated 5 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆107Updated this week
- Assemble bacterial isolate genomes from Nanopore reads☆134Jan 22, 2025Updated last year
- Organism-specific interpretation of AMR genotypes☆17Mar 17, 2026Updated 2 months ago
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆106Jun 25, 2023Updated 2 years ago
- Python implementation of barrnap (Bacterial ribosomal RNA predictor)☆27Jan 25, 2025Updated last year
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year
- ☆34Dec 20, 2023Updated 2 years ago
- Parallel/Homoplasic SNP Finder☆20May 3, 2023Updated 3 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆109Dec 5, 2025Updated 6 months ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- Intra-species bacterial contamination detection☆25Apr 13, 2026Updated last month
- download isfinder database☆13Nov 9, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Creating plasmid maps inside ggplot.☆91Sep 2, 2025Updated 9 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 4 months ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated 2 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆46Aug 20, 2025Updated 9 months ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54May 10, 2026Updated 3 weeks ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Dec 11, 2020Updated 5 years ago