moshi4 / MGCplotterLinks
Microbial Genome Circular plotting tool for comparative genomics using Circos
☆39Updated 3 years ago
Alternatives and similar repositories for MGCplotter
Users that are interested in MGCplotter are comparing it to the libraries listed below
Sorting:
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆34Updated 6 months ago
- Bacterial GWAS analysis☆46Updated 2 weeks ago
- Calculate assocations between genes and traits☆29Updated 10 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Recombination-free trees☆63Updated 5 months ago
- Gene-flank analysis tool☆37Updated last year
- Microbial agile accurate SNP Typer☆30Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated last month
- Graph-based assembly phasing☆90Updated 2 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- strain-level analysis tools☆39Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 5 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- MAGScoT - a MAG scoring and refinement tool☆42Updated last year
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Updated 7 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- Discover and annotate the virome☆58Updated last week
- ☆25Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 2 months ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated 2 weeks ago
- Identify phage regions in bacterial genomes for masking purposes☆33Updated 6 years ago
- Remove human reads from a sequencing run☆47Updated last month
- MAG Circularization Method☆32Updated 3 months ago