moshi4 / MGCplotterLinks
Microbial Genome Circular plotting tool for comparative genomics using Circos
☆38Updated 2 years ago
Alternatives and similar repositories for MGCplotter
Users that are interested in MGCplotter are comparing it to the libraries listed below
Sorting:
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- Bacterial GWAS analysis☆46Updated 3 weeks ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- MAGScoT - a MAG scoring and refinement tool☆37Updated last year
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- Discover and annotate the virome☆53Updated last month
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 5 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- Calculate assocations between genes and traits☆29Updated 8 months ago
- Gene-flank analysis tool☆33Updated 11 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- ☆33Updated last year
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆56Updated 7 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- IslandPath standalone software☆33Updated 2 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- Recombination-free trees☆60Updated 2 months ago
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- strain-level analysis tools☆39Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆36Updated 2 months ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆60Updated 3 weeks ago
- Graph-based assembly phasing☆90Updated 6 months ago