moshi4 / MGCplotterLinks
Microbial Genome Circular plotting tool for comparative genomics using Circos
☆39Updated 2 years ago
Alternatives and similar repositories for MGCplotter
Users that are interested in MGCplotter are comparing it to the libraries listed below
Sorting:
- Bacterial GWAS analysis☆46Updated last week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆33Updated 5 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- Recombination-free trees☆63Updated 4 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- Discover and annotate the virome☆58Updated 3 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 8 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 2 weeks ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Updated last year
- Calculate assocations between genes and traits☆29Updated 10 months ago
- Microbial agile accurate SNP Typer☆30Updated 2 years ago
- ☆33Updated 2 years ago
- Gene-flank analysis tool☆34Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated 2 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Genome-Genome circle synteny☆25Updated 2 years ago
- IslandPath standalone software☆35Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposes☆33Updated 6 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 10 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆49Updated this week
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 months ago