jaumlrc / ProphETLinks
☆11Updated 4 years ago
Alternatives and similar repositories for ProphET
Users that are interested in ProphET are comparing it to the libraries listed below
Sorting:
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last week
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 11 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated this week
- Calculate assocations between genes and traits☆23Updated 2 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 7 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆29Updated 3 weeks ago
- Plasmid exploration of bacterial genomes☆18Updated 3 years ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 5 months ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 8 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated this week
- Classify metagenomic contigs as eukaryotic or prokaryotic☆35Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated last year
- Hybrid Assembler for Plasmids☆10Updated 2 years ago
- Genome size estimation from long read overlaps☆56Updated last month
- Bacterial taxonomy construction and evaluation in R☆13Updated last year
- Colinear block visualisation tool☆31Updated last year
- Systematic resistome analysis☆10Updated 5 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 8 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆30Updated 2 years ago
- Computation of average nucleotide identity with the use of MMseqs2☆13Updated 5 months ago
- ☆32Updated last year
- viralFlye pipeline☆18Updated 9 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 9 months ago
- Microbial agile accurate SNP Typer☆29Updated last year