jaumlrc / ProphETLinks
☆11Updated 4 years ago
Alternatives and similar repositories for ProphET
Users that are interested in ProphET are comparing it to the libraries listed below
Sorting:
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Calculate assocations between genes and traits☆23Updated 3 months ago
- Plasmid exploration of bacterial genomes☆18Updated 3 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- Bacterial taxonomy construction and evaluation in R☆13Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- ☆13Updated 7 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 6 months ago
- Intra-species bacterial contamination detection☆25Updated 4 months ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Updated last year
- A pipeline for bioinformatics analysis of bacterial genomes☆29Updated last month
- Colinear block visualisation tool☆31Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last week
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- ☆32Updated last year
- Order and orientation of complete bacterial genomes☆28Updated last week
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 8 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆28Updated 8 months ago
- Prophage Activity Estimator☆26Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated this week
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆22Updated 3 years ago
- ☆23Updated 4 months ago
- Population genomics from metagenomes☆11Updated 9 months ago
- IslandPath standalone software☆32Updated last year
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 8 months ago