wgmao / NIFA
Non-negative Independent Factor Analysis for single cell RNA-seq
☆11Updated 3 years ago
Alternatives and similar repositories for NIFA:
Users that are interested in NIFA are comparing it to the libraries listed below
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆17Updated 3 years ago
- Bayesian model selection to detect zero-inflated genes☆8Updated 4 years ago
- R package for gene selection using k-NN graphs.☆13Updated last year
- Calculation of distance metrics for matrices☆25Updated 6 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- Normalization for single cell RNA-seq data☆9Updated 2 years ago
- Pairwise Hierarchical Model☆17Updated 3 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- Gene Expression Decomposition and Integration☆17Updated 2 months ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆14Updated 6 years ago
- The million-scale method for single-cell analysis☆10Updated last year
- repo to explore spatial data in R/Bioconductor and Python☆12Updated 5 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆9Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- ☆12Updated 5 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- Gene-level general linear mixed model☆21Updated 3 months ago
- ☆16Updated 3 years ago
- Version 2.1.0 released☆23Updated 5 years ago
- Efficiently compute robust markers across single-cell datasets☆11Updated 4 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆20Updated 9 months ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 10 months ago
- ☆18Updated 4 years ago
- ☆14Updated 5 years ago
- ☆12Updated 4 years ago
- Automatic selection of number of principal components☆15Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago