wgmao / NIFA
Non-negative Independent Factor Analysis for single cell RNA-seq
☆11Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for NIFA
- R package for Flexible dot plots☆26Updated 2 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆17Updated 3 years ago
- The million-scale method for single-cell analysis☆10Updated last year
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Calculation of distance metrics for matrices☆25Updated 5 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- Efficiently compute robust markers across single-cell datasets☆11Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Identify Intra-, Inter-donor variations in bulk or single cell longitudinal dataset☆17Updated last year
- Bayesian model selection to detect zero-inflated genes☆8Updated 4 years ago
- R package for benchmarking single cell analysis methods☆29Updated last year
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Updated 4 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆21Updated 4 years ago
- Automatic selection of number of principal components☆13Updated 2 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆13Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆19Updated 4 months ago
- Pairwise Hierarchical Model☆13Updated 2 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 7 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆24Updated 10 months ago
- R package for gene selection using k-NN graphs.☆13Updated last year
- ☆16Updated 3 years ago
- ☆18Updated 4 months ago
- Version 2.1.0 released☆23Updated 5 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 7 months ago
- ☆11Updated 11 months ago
- Gene Expression Decomposition and Integration☆15Updated 3 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago