wgmao / NIFALinks
Non-negative Independent Factor Analysis for single cell RNA-seq
☆11Updated 3 years ago
Alternatives and similar repositories for NIFA
Users that are interested in NIFA are comparing it to the libraries listed below
Sorting:
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Updated 4 years ago
- ☆11Updated last year
- Calculation of distance metrics for matrices☆26Updated 6 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated last year
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Updated 3 years ago
- Gene Expression Decomposition and Integration☆19Updated 11 months ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- Automatic selection of number of principal components☆17Updated 3 years ago
- R package for gene selection using k-NN graphs.☆13Updated 2 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 3 years ago
- Human brain, >200,000 nuclei☆23Updated 4 years ago
- Trans-association between HLA and TCR-CDR3☆19Updated 2 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆16Updated 6 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Updated 2 years ago
- An R package for visualising cell-cell interactions☆46Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 3 years ago
- ☆29Updated 2 years ago
- ☆19Updated 4 years ago
- Pairwise Hierarchical Model☆20Updated 3 years ago
- ☆21Updated 2 years ago
- Version 2.1.0 released☆23Updated 6 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- CiteFuse:☆28Updated 2 years ago
- deconvolution for RNAseq and bisulfite sequencing☆11Updated 5 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Updated 4 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆19Updated 3 years ago
- The million-scale method for single-cell analysis☆10Updated 2 years ago
- Single-cell analysis with non-negative matrix factorization☆46Updated 6 months ago