Vivianstats / scINSIGHTView external linksLinks
Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
☆22Mar 25, 2024Updated last year
Alternatives and similar repositories for scINSIGHT
Users that are interested in scINSIGHT are comparing it to the libraries listed below
Sorting:
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Sep 20, 2022Updated 3 years ago
- ☆13Jan 23, 2025Updated last year
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- Non-negative Independent Factor Analysis for single cell RNA-seq☆11Feb 25, 2022Updated 3 years ago
- Fast algorithms for GLM-PCA.☆14Mar 12, 2025Updated 11 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated last year
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13May 1, 2023Updated 2 years ago
- scVI extension for unspliced RNA☆16May 18, 2025Updated 8 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Apr 4, 2025Updated 10 months ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated 2 weeks ago
- ☆23Jul 9, 2025Updated 7 months ago
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- Subplex Optimization Algorithm☆11Nov 25, 2025Updated 2 months ago
- Map large-scale single cells to the exact spatial locations☆15Jun 12, 2025Updated 8 months ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- ☆129Mar 27, 2022Updated 3 years ago
- R package for semi-supervised single-cell data integration☆95Jan 27, 2026Updated 2 weeks ago
- Aligning gene expression trajectories of single-cell reference and query systems☆81Aug 10, 2025Updated 6 months ago
- Public repository for the R package intRinsic☆13Dec 17, 2025Updated last month
- scAce: an adaptive embedding and clustering method for scRNA-seq data☆12Sep 8, 2023Updated 2 years ago
- ☆11Aug 21, 2024Updated last year
- Single-cell Case Control Analysis☆52Jan 29, 2026Updated 2 weeks ago
- Interactive visualisation of CellphoneDB results☆11Jan 15, 2025Updated last year
- A experimental SQL extension for declarative data visualisation based on the Grammar of Graphics.☆34Updated this week
- ☆12Jun 6, 2024Updated last year
- ☆14Oct 24, 2025Updated 3 months ago
- Pan-genome Analysis☆12May 4, 2025Updated 9 months ago
- ☆33Jan 26, 2026Updated 2 weeks ago
- ☆25Aug 1, 2022Updated 3 years ago
- A tool for single-cell data analysis.☆41Sep 24, 2025Updated 4 months ago
- A python package for showing JBrowse views☆26Jan 3, 2024Updated 2 years ago
- A Spatial Transcriptomics Geospatial Profile Recovery System Tool through Anchors☆19Jul 24, 2025Updated 6 months ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆13Jan 26, 2026Updated 2 weeks ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆19Updated this week