Vivianstats / scINSIGHT
Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
☆20Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for scINSIGHT
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- cross-species analysis of cell identities, markers and regulations☆12Updated 3 weeks ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆28Updated this week
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 8 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 weeks ago
- ☆20Updated last year
- ☆27Updated 3 months ago
- ☆40Updated 3 months ago
- ☆12Updated 3 years ago
- ☆11Updated 5 years ago
- Vaeda method for computational doublet annotation☆13Updated 4 months ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated this week
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆24Updated 10 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Information-based dimensionality reduction☆29Updated 3 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆15Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- ☆22Updated 2 years ago
- ☆19Updated 2 weeks ago
- ☆16Updated last year
- Analyzing chromatin accessibility data in R☆18Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆21Updated 5 years ago
- scover☆22Updated last year
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Updated 4 months ago