Alternatives and similar repositories for scINSIGHT:

Users that are interested in scINSIGHT are comparing it to the libraries listed below

• jiang-junyao / CACIMAR
  cross-species analysis of cell identities, markers and regulations
  ☆12Updated 2 months ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• gambalab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆17Updated last year
• soumelis-lab / ICELLNET
  ☆19Updated 9 months ago
• dbrg77 / ISSAAC-seq
  ☆16Updated last year
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 3 months ago
• adoostparast / CellR
  CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
  ☆15Updated 3 years ago
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆17Updated this week
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 5 years ago
• Zhen-Miao / PICsnATAC
  Paired Insertion Counting for snATAC-seq data
  ☆17Updated 6 months ago
• wenweixiong / MARVEL
  ☆45Updated 6 months ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated last year
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆23Updated 2 years ago
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆22Updated 2 years ago
• PoolLab / generecovery
  ☆29Updated last year
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆39Updated 11 months ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆25Updated last year
• UPSUTER / GEMLI
  ☆29Updated 3 weeks ago
• veltenlab / mitoClone
  ☆12Updated 3 years ago
• cole-trapnell-lab / pseudospace
  ☆12Updated 5 years ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 5 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆14Updated 4 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆30Updated last year
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 4 years ago
• Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel
  ☆15Updated 2 years ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆26Updated 4 years ago
• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated 8 months ago
• CyrilLagger / scDiffCom
  Difference in Intercellular Communication from scRNA-seq data
  ☆21Updated last year