Alternatives and similar repositories for scINSIGHT

Users that are interested in scINSIGHT are comparing it to the libraries listed below

• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆19Updated 11 months ago
• jiang-junyao / CACIMAR
  cross-species analysis of cell identities, markers and regulations
  ☆12Updated 6 months ago
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆25Updated 3 years ago
• Core-Bioinformatics / ClustAssess
  Tools for assessing clustering robustness
  ☆28Updated last month
• satijalab / Mixscale
  ☆23Updated 3 months ago
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 6 years ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated 2 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆31Updated 10 months ago
• CyrilLagger / scDiffCom
  Difference in Intercellular Communication from scRNA-seq data
  ☆24Updated 3 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆44Updated 4 months ago
• cole-trapnell-lab / pseudospace
  ☆12Updated 6 years ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated last year
• BoevaLab / ANS_signature_scoring
  ANS_signature_scoring: A gene expression signature scoring Python package.
  ☆16Updated 3 months ago
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆32Updated 9 months ago
• OscarGVelasco / LotsOfCells
  R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data
  ☆22Updated 3 months ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 3 years ago
• linnarsson-lab / cytograph
  Algorithms for single-cell analysis
  ☆29Updated 4 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• ChenWeiyan / LandSCENT
  Landscape Single Cell Entropy
  ☆21Updated 5 years ago
• limin321 / stmut
  Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data
  ☆14Updated last year
• Sun-lab / ideas
  Individual level Differential Expression Analysis for Single cells
  ☆26Updated 3 years ago
• chanwkimlab / MarcoPolo
  MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…
  ☆20Updated last year
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆26Updated 2 years ago
• kjgaulton / pipelines
  Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data
  ☆27Updated 5 years ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆38Updated 2 years ago
• soumelis-lab / ICELLNET
  ☆22Updated 6 months ago
• SydneyBioX / CiteFuse
  CiteFuse:
  ☆28Updated 2 years ago
• ETH-NEXUS / scAmpi_single_cell_RNA
  Code related to scRNA analysis using the scAmpi workflow
  ☆27Updated 7 months ago