igrabski / sc-SHCLinks
Significance analysis for clustering single-cell RNA-sequencing data
☆116Updated 10 months ago
Alternatives and similar repositories for sc-SHC
Users that are interested in sc-SHC are comparing it to the libraries listed below
Sorting:
- Cell type prioritization in single-cell data☆121Updated 8 months ago
- Methods to discover gene programs on single-cell data☆127Updated this week
- A Bayesian model for compositional single-cell data analysis☆169Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆143Updated 3 years ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆107Updated 3 months ago
- ☆172Updated 2 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆148Updated 5 months ago
- reticulate-free single cell format conversion☆171Updated this week
- Gene set scoring for single-cell data☆154Updated 2 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆115Updated 2 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆107Updated 2 months ago
- The integration of single cell rank-based gene set enrichment analysis☆127Updated last week
- Direct estimation of mean and covariance from single cell RNA seq experiments☆110Updated 2 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆95Updated 4 years ago
- BANKSY: spatial clustering☆117Updated 2 weeks ago
- Conversion between scRNA-seq objects☆178Updated 3 weeks ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆105Updated 2 years ago
- R package for semi-supervised single-cell data integration☆83Updated last month
- Assessing the purity of single cell population☆130Updated 3 years ago
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 8 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆199Updated last month
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆164Updated 3 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆101Updated 10 months ago
- ☆122Updated 3 years ago
- Quantifying metabolism activity at the single-cell resolution☆136Updated 2 weeks ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆109Updated 5 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆82Updated last year