igrabski / sc-SHCLinks
Significance analysis for clustering single-cell RNA-sequencing data
☆116Updated 8 months ago
Alternatives and similar repositories for sc-SHC
Users that are interested in sc-SHC are comparing it to the libraries listed below
Sorting:
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- Methods to discover gene programs on single-cell data☆117Updated last month
- Efficient and precise single-cell reference atlas mapping with Symphony☆106Updated 2 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆147Updated 4 months ago
- Gene set scoring for single-cell data☆150Updated 3 weeks ago
- A Bayesian model for compositional single-cell data analysis☆163Updated 2 years ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆93Updated 3 years ago
- Cell type prioritization in single-cell data☆119Updated 7 months ago
- reticulate-free single cell format conversion☆154Updated 5 months ago
- Multiome GRN inference.☆123Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆127Updated 6 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆111Updated last month
- The integration of single cell rank-based gene set enrichment analysis☆123Updated 10 months ago
- Assessing the purity of single cell population☆129Updated 2 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆105Updated 2 months ago
- Quantifying metabolism activity at the single-cell resolution☆136Updated 9 months ago
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆160Updated 2 months ago
- Single-cell disease relevance score (scDRS)☆132Updated 7 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆109Updated 3 weeks ago
- Create stacked violin plot☆49Updated 3 years ago
- R package for semi-supervised single-cell data integration☆82Updated 2 weeks ago
- ☆169Updated 3 weeks ago
- ☆119Updated 3 years ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆138Updated 3 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆147Updated 2 months ago
- BANKSY: spatial clustering☆111Updated 2 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆104Updated last month
- R package to visualize gene expression data based on weighted kernel density estimation☆103Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆128Updated 3 months ago