Significance analysis for clustering single-cell RNA-sequencing data
☆123Sep 7, 2024Updated last year
Alternatives and similar repositories for sc-SHC
Users that are interested in sc-SHC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated 8 months ago
- ☆20Sep 8, 2023Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- Methods to discover gene programs on single-cell data☆178Sep 26, 2025Updated 5 months ago
- R package for analysing single cell data☆63Dec 8, 2022Updated 3 years ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆191Jan 30, 2026Updated last month
- A clusterability measure for scRNA-seq data.☆18Feb 2, 2022Updated 4 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆128May 5, 2025Updated 10 months ago
- R package for semi-supervised single-cell data integration☆97Jan 27, 2026Updated last month
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆83Updated this week
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆33Nov 28, 2025Updated 3 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆423Sep 4, 2025Updated 6 months ago
- ☆31Apr 12, 2023Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆98Feb 23, 2026Updated last month
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- R package to infer biological activities from omics data using a collection of methods.☆286Dec 16, 2025Updated 3 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆236Aug 7, 2024Updated last year
- Methods for detecting doublets in single-cell sequencing data☆233Feb 12, 2026Updated last month
- An R package designed to demultiplex cell hashing data☆31Feb 10, 2026Updated last month
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆122Updated this week
- ☆183May 6, 2025Updated 10 months ago
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated last month
- Latent Embedding Multivariate Regression☆100Updated this week
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆18Nov 18, 2025Updated 4 months ago
- scVI extension for unspliced RNA☆16May 18, 2025Updated 10 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Mar 25, 2024Updated last year
- Interactive visualisation of CellphoneDB results☆12Jan 15, 2025Updated last year
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆24Aug 15, 2023Updated 2 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆54Oct 31, 2024Updated last year
- Single-Cell Inference of Class Switch Recombination☆20Feb 11, 2026Updated last month
- ☆292Nov 10, 2024Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 7 months ago
- Single-cell analysis with non-negative matrix factorization☆48Jul 24, 2025Updated 8 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆444Jan 22, 2026Updated 2 months ago
- ☆122Sep 4, 2025Updated 6 months ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Aug 24, 2023Updated 2 years ago
- An R package for visualising cell-cell interactions☆46Mar 16, 2026Updated last week
- Probabilistic gene expression barcodes for cell type annotation☆26Apr 26, 2022Updated 3 years ago
- An R framework for choosing clustering parameters in scRNA-seq analysis pipelines☆36Jun 12, 2020Updated 5 years ago