igrabski / sc-SHCLinks
Significance analysis for clustering single-cell RNA-sequencing data
☆124Updated last year
Alternatives and similar repositories for sc-SHC
Users that are interested in sc-SHC are comparing it to the libraries listed below
Sorting:
- Cell type prioritization in single-cell data☆132Updated last year
- A Bayesian model for compositional single-cell data analysis☆185Updated 2 years ago
- AUCell: score single cells with gene regulatory networks☆180Updated last year
- Methods to discover gene programs on single-cell data☆168Updated 3 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆113Updated 2 months ago
- R package for semi-supervised single-cell data integration☆94Updated 3 weeks ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆178Updated 5 months ago
- ☆181Updated 8 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆114Updated 8 months ago
- reticulate-free single cell format conversion☆201Updated last week
- R package to visualize gene expression data based on weighted kernel density estimation☆109Updated last year
- The integration of single cell rank-based gene set enrichment analysis☆142Updated 6 months ago
- Multiome GRN inference.☆131Updated last year
- Gene set scoring for single-cell data☆176Updated 2 months ago
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆126Updated 8 months ago
- Conversion between scRNA-seq objects☆195Updated 2 weeks ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆140Updated 4 years ago
- scDIOR: Single cell data IO softwaRe☆152Updated 3 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆120Updated last month
- Assessing the purity of single cell population☆140Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- BANKSY: spatial clustering☆133Updated 3 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆213Updated 2 weeks ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆135Updated 5 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆96Updated 4 years ago
- Quantifying metabolism activity at the single-cell resolution☆150Updated 6 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆119Updated 2 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆85Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆137Updated 10 months ago