Alternatives and similar repositories for sc-SHC

Users that are interested in sc-SHC are comparing it to the libraries listed below

• neurorestore / Libra
  ☆173Updated 3 months ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆152Updated last week
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆172Updated 2 years ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆180Updated 3 weeks ago
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆140Updated last month
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆124Updated 10 months ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆106Updated 2 years ago
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆164Updated last year
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago
• prabhakarlab / Banksy
  BANKSY: spatial clustering
  ☆119Updated last week
• swaruplab / Single-nuclei-epigenomic-and-transcriptomic-landscape-in-Alzheimer-disease
  Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease
  ☆95Updated 4 years ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆145Updated 3 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆108Updated 3 months ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆96Updated 4 years ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆205Updated 2 weeks ago
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆130Updated last month
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆183Updated 2 months ago
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆108Updated 4 months ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆120Updated last month
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆103Updated last year
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆165Updated 4 months ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆115Updated 3 months ago
• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆137Updated last month
• PaulingLiu / ROGUE
  Assessing the purity of single cell population
  ☆134Updated 3 years ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆159Updated 3 months ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆87Updated last week
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆104Updated 11 months ago
• navinlabcode / CellTrek
  ☆125Updated 3 years ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated last year
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆132Updated 9 months ago