igrabski / sc-SHCLinks
Significance analysis for clustering single-cell RNA-sequencing data
☆123Updated last year
Alternatives and similar repositories for sc-SHC
Users that are interested in sc-SHC are comparing it to the libraries listed below
Sorting:
- A Bayesian model for compositional single-cell data analysis☆187Updated 3 weeks ago
- Cell type prioritization in single-cell data☆136Updated last year
- Gene set scoring for single-cell data☆180Updated 3 months ago
- AUCell: score single cells with gene regulatory networks☆182Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆113Updated 3 months ago
- Methods to discover gene programs on single-cell data☆172Updated 4 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆140Updated 4 years ago
- R package for semi-supervised single-cell data integration☆95Updated last week
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆115Updated 9 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆179Updated 5 months ago
- Single Cell Cluster Evaluation☆99Updated 4 years ago
- scDIOR: Single cell data IO softwaRe☆153Updated 3 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆121Updated last month
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆96Updated 4 years ago
- ☆181Updated 8 months ago
- Conversion between scRNA-seq objects☆198Updated 3 weeks ago
- R package to visualize gene expression data based on weighted kernel density estimation☆110Updated last year
- The integration of single cell rank-based gene set enrichment analysis☆143Updated 3 weeks ago
- reticulate-free single cell format conversion☆206Updated last week
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆120Updated 3 months ago
- Multiome GRN inference.☆133Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆138Updated 6 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆88Updated 3 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆127Updated 8 months ago
- BANKSY: spatial clustering☆134Updated 3 months ago
- Assessing the purity of single cell population☆141Updated 3 years ago
- Quantifying metabolism activity at the single-cell resolution☆151Updated 7 months ago
- A Shiny web app for mapping datasets using Seurat v4☆144Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆85Updated 2 years ago