igrabski / scRNAseq-cell-type
Probabilistic gene expression barcodes for cell type annotation
☆25Updated 2 years ago
Alternatives and similar repositories for scRNAseq-cell-type:
Users that are interested in scRNAseq-cell-type are comparing it to the libraries listed below
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- ☆20Updated 3 months ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Collection of useful methods for single cell analysis☆14Updated 6 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 5 years ago
- ☆29Updated last year
- post-clustering differential expression test☆35Updated 5 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- R package for gene selection using k-NN graphs.☆13Updated last year
- An r package that works as a wrapper to homologene☆42Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- Calculation of distance metrics for matrices☆25Updated 6 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆26Updated 3 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 8 months ago
- ☆12Updated 9 months ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- An analytics package for single cell data☆22Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- ☆21Updated 2 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- scover☆23Updated last year
- ☆34Updated 9 months ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 7 months ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆14Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 5 years ago