igrabski / scRNAseq-cell-typeLinks
Probabilistic gene expression barcodes for cell type annotation
☆25Updated 3 years ago
Alternatives and similar repositories for scRNAseq-cell-type
Users that are interested in scRNAseq-cell-type are comparing it to the libraries listed below
Sorting:
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- Calculation of distance metrics for matrices☆26Updated 6 years ago
- Exon-Intron Split Analysis (EISA) in R☆17Updated last month
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 5 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- Trans-association between HLA and TCR-CDR3☆19Updated 2 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- ☆63Updated 9 months ago
- Inference of switch-like differential expression along single-cell trajectories☆21Updated 8 years ago
- ☆26Updated 7 months ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- Pairwise Hierarchical Model☆20Updated 3 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- R package for gene selection using k-NN graphs.☆13Updated 2 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Updated 2 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 8 months ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Updated 8 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
- distinct: a method for differential analyses via hierarchical permutation tests☆11Updated 2 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆40Updated last year
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Updated 3 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago