rnabioco / djvdj

Related projects ⓘ

Alternatives and complementary repositories for djvdj

• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆36Updated 2 years ago
• rnabioco / scraps
  Single-cell RNA Processing Software
  ☆11Updated last month
• UPSUTER / GEMLI
  ☆27Updated 3 months ago
• statOmics / satuRn
  satuRn is a highly performant and scalable method for performing differential transcript usage analyses.
  ☆20Updated last year
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆31Updated 3 years ago
• crazyhottommy / scRNA-seq-workshop-Fall-2019
  Harvard FAS informatics scRNAseq workshop website
  ☆37Updated 5 years ago
• Core-Bioinformatics / bulkAnalyseR
  ☆26Updated last year
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆55Updated this week
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆33Updated 3 years ago
• PoolLab / generecovery
  ☆29Updated last year
• GabrielHoffman / dreamlet
  Perform differential expression analysis on multi-sample single cell datasets using linear mixed models
  ☆20Updated 2 weeks ago
• NBISweden / workshop-epigenomics-RTDs
  workshop website on readthedocs
  ☆19Updated last week
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆42Updated last year
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆42Updated last year
• NKI-GCF / XenofilteR
  Filtering of PDX samples for mouse derived reads
  ☆27Updated last year
• NMikolajewicz / scMiko
  R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…
  ☆24Updated last year
• ebi-gene-expression-group / r-seurat-scripts
  Scripts to install as a Bioconda package for making workflows
  ☆18Updated 2 months ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆38Updated 2 years ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆49Updated last year
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆38Updated 3 weeks ago
• arnavm / multimodal-scRNA-seq
  Figure depicting the breadth of multimodal scRNA-seq technologies
  ☆15Updated 5 years ago
• Mayrlab / scUTRquant
  Bioinformatics pipeline for single-cell 3' UTR isoform quantification
  ☆15Updated this week
• TranslationalBioinformaticsUnit / GeneSetCluster
  a tool for summarizing and integrating gene-set analysis results
  ☆16Updated 3 months ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆15Updated 2 years ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆46Updated last month
• satijalab / azimuth-references
  ☆19Updated 2 weeks ago
• Danko-Lab / tutorials
  Tutorials covering various topics in genomic data analysis.
  ☆16Updated 5 years ago
• PhanstielLab / bedtoolsr
  R package wrapping bedtools
  ☆37Updated 2 months ago
• cozygene / TCA
  ☆17Updated 3 years ago
• ucdavis-bioinformatics-training / 2020-Advanced_Single_Cell_RNA_Seq
  Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory …
  ☆12Updated last year