carmonalab / scGateLinks
marker-based purification of cell types from single-cell RNA-seq datasets
☆111Updated last month
Alternatives and similar repositories for scGate
Users that are interested in scGate are comparing it to the libraries listed below
Sorting:
- R package for semi-supervised single-cell data integration☆82Updated 2 weeks ago
- R package for pathway analysis in scRNA-seq data☆74Updated 9 months ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆106Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆104Updated last month
- R package for Pathway RespOnsive GENe activity inference☆105Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆71Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆105Updated 2 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆86Updated 11 months ago
- Gene set scoring for single-cell data☆150Updated 3 weeks ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- ☆61Updated 5 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆103Updated last year
- Create stacked violin plot☆49Updated 3 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated 5 months ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆93Updated 3 years ago
- ☆62Updated 4 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆68Updated 10 months ago
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated last month
- ☆64Updated last year
- ☆46Updated 3 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆73Updated 4 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆116Updated 8 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆81Updated last year
- Analysis of cell-cell communication at single-cell resolution☆101Updated 8 months ago
- Methods to discover gene programs on single-cell data☆117Updated last month
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆70Updated 2 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 3 years ago