marker-based purification of cell types from single-cell RNA-seq datasets
☆141Mar 13, 2026Updated 2 months ago
Alternatives and similar repositories for scGate
Users that are interested in scGate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Interpretation of cell states using reference single-cell maps☆321Dec 19, 2025Updated 5 months ago
- R package for semi-supervised single-cell data integration☆98Jan 27, 2026Updated 4 months ago
- Gene set scoring for single-cell data☆196Apr 29, 2026Updated last month
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 9 months ago
- ☆17Sep 28, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Easy single cell analysis platform for enrichment☆225Apr 3, 2026Updated 2 months ago
- Methods to discover gene programs on single-cell data☆189May 21, 2026Updated 2 weeks ago
- Hierarchical Cell Annotation☆30Nov 17, 2024Updated last year
- A database of useful gene signatures for single-cell analysis☆28May 19, 2025Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆98Nov 30, 2023Updated 2 years ago
- ☆302Nov 10, 2024Updated last year
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆301May 11, 2026Updated 3 weeks ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 3 years ago
- R package for analysing single cell data☆64Dec 8, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A toolkit for single-cell immune profiling☆368May 12, 2026Updated 3 weeks ago
- R package for integrating and analyzing multiple single-cell datasets☆430Feb 4, 2026Updated 4 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆434May 11, 2026Updated 3 weeks ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated 10 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆223Mar 2, 2026Updated 3 months ago
- Using BCR and expression for sequence embedding☆27Apr 3, 2026Updated 2 months ago
- Scissor package☆266May 10, 2024Updated 2 years ago
- Cell type pipes for R☆53Jan 27, 2024Updated 2 years ago
- scPred package for cell type prediction from scRNA-seq data☆102Jan 18, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An R package designed to demultiplex cell hashing data☆32May 10, 2026Updated 3 weeks ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆253Apr 1, 2026Updated 2 months ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆115Dec 18, 2025Updated 5 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆33Feb 28, 2022Updated 4 years ago
- Reference mapping for single-cell genomics☆405Mar 21, 2026Updated 2 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆225Apr 26, 2026Updated last month
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆241May 8, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Simplify functional enrichment results☆126Jan 30, 2026Updated 4 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆232Updated this week
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆45Apr 23, 2026Updated last month
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 7 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆61Aug 17, 2024Updated last year
- High dimensional weighted gene co-expression network analysis☆476Mar 13, 2026Updated 2 months ago
- Multiome GRN inference.☆135Apr 10, 2026Updated last month