carmonalab / scGateLinks
marker-based purification of cell types from single-cell RNA-seq datasets
☆135Updated 5 months ago
Alternatives and similar repositories for scGate
Users that are interested in scGate are comparing it to the libraries listed below
Sorting:
- R package for semi-supervised single-cell data integration☆95Updated 3 weeks ago
- R package for Pathway RespOnsive GENe activity inference☆113Updated 2 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆65Updated 4 years ago
- ☆74Updated 2 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆75Updated 2 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆109Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆114Updated 8 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆121Updated last month
- scGSVA: Perform GSVA for single cell RNA seq☆68Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆113Updated 2 months ago
- ☆65Updated 6 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆94Updated 7 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated last month
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆43Updated last week
- Significance analysis for clustering single-cell RNA-sequencing data☆123Updated last year
- Pan-Cancer Single Cell Classifier☆83Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Updated 3 years ago
- AUCell: score single cells with gene regulatory networks☆182Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆103Updated 3 weeks ago
- A Shiny web app for mapping datasets using Seurat v4☆143Updated last year
- Create stacked violin plot☆51Updated 3 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆49Updated 8 months ago
- ☆41Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆98Updated 2 years ago