carmonalab / scGateLinks
marker-based purification of cell types from single-cell RNA-seq datasets
☆131Updated 3 months ago
Alternatives and similar repositories for scGate
Users that are interested in scGate are comparing it to the libraries listed below
Sorting:
- R package for semi-supervised single-cell data integration☆90Updated 3 months ago
- R package for Pathway RespOnsive GENe activity inference☆110Updated 2 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆74Updated this week
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- ☆74Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 6 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated 2 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆107Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆111Updated 2 weeks ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated last month
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 4 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆65Updated 4 years ago
- Pan-Cancer Single Cell Classifier☆81Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆137Updated last year
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆66Updated last year
- AUCell: score single cells with gene regulatory networks☆174Updated last year
- ☆62Updated 6 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 3 months ago
- ☆41Updated 4 years ago
- Create stacked violin plot☆51Updated 3 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 10 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆119Updated last year
- ☆77Updated last year