Alternatives and similar repositories for cyCombine

Users that are interested in cyCombine are comparing it to the libraries listed below

• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆98Updated 8 months ago
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆24Updated 3 years ago
• wanglabtongji / CCI
  Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information
  ☆23Updated 3 years ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆45Updated 2 weeks ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆44Updated 3 years ago
• BaderLab / Tempora
  Pathway-based trajectory inference method for time-series scRNAseq data
  ☆25Updated 4 years ago
• alserglab / mascarade
  Generate masks for scRNA-seq clusters on t-SNE or UMAP plots
  ☆45Updated 2 weeks ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆45Updated 5 months ago
• SCA-IRCM / SingleCellSignalR
  R package for Bioconductor submission
  ☆38Updated 3 years ago
• milescsmith / ReductionWrappers
  R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
  ☆36Updated last year
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆40Updated 3 years ago
• Winnie09 / Lamian
  ☆62Updated 5 months ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆63Updated 3 years ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆52Updated 2 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆67Updated 3 months ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆27Updated 3 years ago
• madsen-lab / valiDrops
  ☆16Updated 10 months ago
• dosorio / rPanglaoDB
  An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.
  ☆26Updated 2 years ago
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆36Updated 8 months ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 3 years ago
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆91Updated last month
• BioBam / scMaSigPro
  Implementation of MaSigPro for scRNA-Seq Data
  ☆18Updated last year
• QiuyuLian / CITE-sort
  ☆17Updated 4 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆56Updated 8 months ago
• carmonalab / SignatuR
  A database of useful gene signatures for single-cell analysis
  ☆28Updated 8 months ago
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆29Updated 3 years ago
• cancer-evolution / SPIAT
  Spatial Image Analysis of Tissues
  ☆15Updated 3 years ago
• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆34Updated 7 months ago
• pachterlab / SpatialFeatureExperiment
  Extension of SpatialExperiment with sf
  ☆57Updated last month
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆62Updated last month