Robust Integration of Single-Cell Cytometry Datasets
☆33Mar 5, 2026Updated 2 weeks ago
Alternatives and similar repositories for cyCombine
Users that are interested in cyCombine are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cytofin-an R package for CyTOF data integration☆12Jan 13, 2022Updated 4 years ago
- R library to normalize cytometry data☆39Jan 16, 2026Updated 2 months ago
- A short script for converting .csv file data into an .fcs file, and vise versa.☆18Apr 2, 2021Updated 4 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 2 years ago
- R package for pre-processing of mass and flow cytometry data☆47Sep 6, 2022Updated 3 years ago
- Cytometry dATa anALYsis Tools☆75Mar 9, 2026Updated 2 weeks ago
- Calculation of distance metrics for matrices☆26Mar 1, 2019Updated 7 years ago
- R package for semi-supervised single-cell data integration☆97Jan 27, 2026Updated last month
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆20Mar 16, 2026Updated last week
- A tutorial for the analysis of high-dimensional flow cytometry data☆27Aug 28, 2019Updated 6 years ago
- Cluster Identity Predictor (R package implementation)☆21Mar 8, 2022Updated 4 years ago
- Huge-scale, high-performance flow cytometry clustering in Julia☆36Nov 3, 2025Updated 4 months ago
- Using TCR and expression for sequence embedding☆62Jan 6, 2026Updated 2 months ago
- R package for differential discovery analyses in high-dimensional cytometry data☆24Feb 8, 2025Updated last year
- ☆32Jan 22, 2026Updated 2 months ago
- ☆16Apr 17, 2024Updated last year
- R package for metabolic enzyme enrichment anaylsis☆13Oct 24, 2025Updated 5 months ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆25Feb 12, 2026Updated last month
- Implementation of Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics 2024).☆13Jul 15, 2024Updated last year
- scDataviz: single cell dataviz and downstream analyses☆66Sep 24, 2021Updated 4 years ago
- Core flow cytometry infrastructure☆56Jan 1, 2026Updated 2 months ago
- Scalable nonparametric clustering with unified marker gene selection for single-cell RNA-seq data☆24Dec 24, 2025Updated 3 months ago
- ☆26May 16, 2025Updated 10 months ago
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Aug 28, 2023Updated 2 years ago
- ☆12Apr 3, 2023Updated 2 years ago
- Nature Computational Science: Predicting drug responses of unseen cell types through transfer learning with foundation models☆35Feb 2, 2026Updated last month
- collections of tools for cytometry data analysis☆14Jul 9, 2020Updated 5 years ago
- BioC2020: Where Software and Biology Connect☆12Mar 15, 2023Updated 3 years ago
- ☆11May 30, 2023Updated 2 years ago
- Framework for integrating heterogeneous modalities of data☆17Sep 17, 2022Updated 3 years ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆11Oct 31, 2023Updated 2 years ago
- The Software of UnionCom Algorithm☆25Jul 29, 2024Updated last year
- Fast embedding ot multidimensional datasets, great for cytometry data☆26Mar 8, 2026Updated 2 weeks ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆39Nov 14, 2022Updated 3 years ago
- distinct: a method for differential analyses via hierarchical permutation tests☆11Dec 4, 2023Updated 2 years ago
- R package for Bioconductor submission☆40Dec 8, 2022Updated 3 years ago
- Python package to generate high dimensional Flow Cytometry datasets using imputation by XGBoost regression☆12Sep 30, 2024Updated last year
- A package for the analysis of Imaging Mass Cytometry data☆15Mar 5, 2026Updated 2 weeks ago
- Mosaic single cell data integration using non-overlapping features☆38Sep 20, 2022Updated 3 years ago