korsunskylab / rcnaLinks
R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)
☆15Updated 2 years ago
Alternatives and similar repositories for rcna
Users that are interested in rcna are comparing it to the libraries listed below
Sorting:
- Single-cell analysis with non-negative matrix factorization☆45Updated 2 months ago
- Cell type pipes for R☆52Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- ☆43Updated 4 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 3 months ago
- R package for specialised analysis of single cell data☆39Updated 2 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Updated 3 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And …☆15Updated 4 years ago
- Toolkit for Single-Cell Velocity☆59Updated 2 months ago
- ☆29Updated 3 years ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆17Updated 10 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆25Updated last week
- R API and htmlwidget for Vitessce☆42Updated last month
- From geospatial to spatial -omics☆97Updated 2 weeks ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated last month
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- R package for Bioconductor submission☆37Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 3 months ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆23Updated 5 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago