korsunskylab / rcnaLinks
R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)
☆15Updated 2 years ago
Alternatives and similar repositories for rcna
Users that are interested in rcna are comparing it to the libraries listed below
Sorting:
- Single-cell analysis with non-negative matrix factorization☆47Updated 6 months ago
- Cell type pipes for R☆52Updated 2 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 3 years ago
- An r package that works as a wrapper to homologene☆49Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 8 months ago
- Toolkit for Single-Cell Velocity☆59Updated 6 months ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Updated 4 years ago
- Normalize CITEseq Data☆67Updated 2 months ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- ☆43Updated 5 years ago
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆45Updated 3 years ago
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Updated 7 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 7 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆39Updated 3 years ago
- ☆27Updated 3 years ago
- ☆29Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- R API and htmlwidget for Vitessce☆44Updated 5 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆21Updated 3 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- From geospatial to spatial -omics☆100Updated 2 months ago
- A database of useful gene signatures for single-cell analysis☆28Updated 8 months ago
- ☆31Updated 3 years ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆19Updated last year
- Extension of SpatialExperiment with sf☆57Updated 3 weeks ago
- A repository for benchmarking spatial deconvolution and mapping tools☆36Updated 8 months ago
- COMET Single-Cell Marker Detection tool☆32Updated 3 years ago