Alternatives and similar repositories for rcna

Users that are interested in rcna are comparing it to the libraries listed below

• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆45Updated 4 months ago
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆52Updated last year
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆21Updated 2 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆40Updated 4 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆46Updated 2 years ago
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆56Updated 6 months ago
• shenorrLabTRDF / cellAlign
  ☆43Updated 4 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆40Updated 3 years ago
• saeyslab / brainimmuneatlas
  Overview of the scripts used to analyse the brainimmuneatlas data
  ☆19Updated 5 years ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 6 years ago
• msraredon / Connectome
  ☆30Updated 3 years ago
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆58Updated 4 months ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆43Updated 3 years ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 4 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated last year
• vitessce / vitessceR
  R API and htmlwidget for Vitessce
  ☆44Updated 3 months ago
• GabrielHoffman / dreamlet
  Perform differential expression analysis on multi-sample single cell datasets using linear mixed models
  ☆27Updated last month
• gdagstn / borges
  Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data
  ☆18Updated 5 months ago
• niaid / dsb
  Normalize CITEseq Data
  ☆66Updated 3 weeks ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆38Updated 3 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• immunogenomics / singlecellmethods
  Collection of useful methods for single cell analysis
  ☆14Updated last year
• hansenlab / tricycle
  ☆27Updated 3 years ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 3 years ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆47Updated 2 years ago
• Elisseeff-Lab / domino
  A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…
  ☆17Updated last year
• carmonalab / SignatuR
  A database of useful gene signatures for single-cell analysis
  ☆27Updated 6 months ago
• saezlab / MOFAcell
  Code used for muti cellular factor analysis
  ☆14Updated last year
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆35Updated 6 months ago
• niaid / covid19-time-resolved
  This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…
  ☆15Updated 4 years ago