korsunskylab / rcnaLinks
R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)
☆15Updated 2 years ago
Alternatives and similar repositories for rcna
Users that are interested in rcna are comparing it to the libraries listed below
Sorting:
- Single-cell analysis with non-negative matrix factorization☆45Updated last month
- Cell type pipes for R☆52Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- An r package that works as a wrapper to homologene☆46Updated last year
- R package for specialised analysis of single cell data☆39Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 3 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆42Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 3 years ago
- R API and htmlwidget for Vitessce☆42Updated last month
- Cell-type Relationship Analysis Workflow Done Across Distances☆36Updated 3 months ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆17Updated 9 months ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Updated 4 years ago
- ☆12Updated last year
- ☆29Updated 2 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated last week
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Normalize CITEseq Data☆66Updated 5 months ago
- Toolkit for Single-Cell Velocity☆59Updated 2 months ago
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Updated 2 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- ☆41Updated 4 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆25Updated 4 months ago
- ☆42Updated 4 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- From geospatial to spatial -omics☆96Updated this week
- Extension of SpatialExperiment with sf☆55Updated 3 weeks ago
- Single-cell Mutual Information-based Network Engineering Ranger☆20Updated 2 weeks ago
- A database of useful gene signatures for single-cell analysis☆25Updated 3 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 months ago