browning-lab / flareLinks
The flare program performs local ancestry inference
☆40Updated 2 weeks ago
Alternatives and similar repositories for flare
Users that are interested in flare are comparing it to the libraries listed below
Sorting:
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆65Updated last month
- ☆43Updated 4 months ago
- Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…☆38Updated last year
- Workflow for processing Illumina sequencing runs for ancient human DNA☆23Updated 4 years ago
- Experimental EIGENSOFT performance improvements.☆22Updated 10 years ago
- A fast, scalable, and accurate local ancestry method.☆100Updated last year
- Module for analysing admixture graphs☆28Updated 7 years ago
- An R package for reproducible and automated ADMIXTOOLS analyses☆33Updated 5 months ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- ☆30Updated 2 months ago
- A set of tools for modelling ancestry patterns along the genome.☆22Updated last week
- RFMIX - Local Ancestry and Admixture Inference Version 2☆88Updated 2 years ago
- Method for dating admixture in ancient DNA specimens☆27Updated 3 years ago
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies☆16Updated 4 years ago
- Analysis of inference methods on standard population models☆25Updated 3 years ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 2 years ago
- An R script to generate plots for ADMIXTURE runs, for multiple K values.☆19Updated 5 months ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Updated 7 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆13Updated 2 years ago
- https://filippob.github.io/introduction_to_gwas/☆20Updated last month
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Updated 3 weeks ago
- Repository for pipeline code☆26Updated last year
- ☆20Updated last year
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆26Updated 5 years ago
- genotype dimensionality reduction with a VAE☆46Updated 5 months ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆50Updated 4 months ago
- Haplotype and population structure inference using neural networks.☆27Updated 8 months ago
- tools to efficiently retrieve and calculate LD☆33Updated 3 years ago