AI-sandbox / gnomix
A fast, scalable, and accurate local ancestry method.
☆90Updated 7 months ago
Alternatives and similar repositories for gnomix:
Users that are interested in gnomix are comparing it to the libraries listed below
- RFMIX - Local Ancestry and Admixture Inference Version 2☆82Updated 2 years ago
- A set of functions to visualise genotypes based on a VCF☆85Updated 3 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- Pinpoints the mutation favored by selection☆33Updated 3 years ago
- Haplotype based scans for selection☆120Updated last week
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆79Updated this week
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆96Updated last week
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆56Updated 3 months ago
- A set of tools for modelling ancestry patterns along the genome.☆22Updated 3 weeks ago
- Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc☆107Updated 3 years ago
- MOsaic CHromosomal Alterations (MoChA) caller☆83Updated last week
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- Documentation archive for GATK tools and workflows☆84Updated 5 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆96Updated last year
- Here we present a method to plot the outputs of RFMIX version 2☆22Updated 6 months ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆30Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆41Updated 5 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- Segmented HAPlotype Estimation and Imputation Tool☆75Updated 6 months ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- ☆70Updated 3 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆46Updated this week
- don't get DUP'ed or DEL'ed by your putative SVs.☆104Updated 4 years ago
- A library for running k-mers based GWAS☆106Updated 3 months ago
- Same species annotation lift over pipeline.☆96Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated last week
- Rapid population clustering with autoencoders☆68Updated 7 months ago
- Phased assembly variant caller☆109Updated 2 months ago
- A suite of tools for detecting expansions of short tandem repeats☆80Updated last year
- Ancestry and Kinship Tools☆70Updated 2 years ago