Alternatives and similar repositories for gnomix

Users that are interested in gnomix are comparing it to the libraries listed below

• slowkoni / rfmix
  RFMIX - Local Ancestry and Admixture Inference Version 2
  ☆86Updated 2 years ago
• AI-sandbox / neural-admixture
  Rapid population clustering with autoencoders
  ☆77Updated last week
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆86Updated 3 years ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆60Updated last month
• armartin / ancestry_pipeline
  Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc
  ☆109Updated 3 years ago
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆99Updated 3 weeks ago
• broadinstitute / gatk-docs
  Documentation archive for GATK tools and workflows
  ☆85Updated 5 years ago
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆32Updated last year
• szpiech / selscan
  Haplotype based scans for selection
  ☆130Updated last month
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆109Updated 7 months ago
• browning-lab / flare
  The flare program performs local ancestry inference
  ☆39Updated 7 months ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆34Updated 3 years ago
• RAHenriksen / NGSNGS
  NGSNGS: Next generation simulator for next generation sequencing data
  ☆50Updated 6 months ago
• nt246 / lcwgs-guide-tutorial
  ☆86Updated 3 years ago
• gravelLab / tracts
  A set of tools for modelling ancestry patterns along the genome.
  ☆22Updated 4 months ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆116Updated 6 months ago
• rwdavies / STITCH
  STITCH - Sequencing To Imputation Through Constructing Haplotypes
  ☆81Updated last week
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆47Updated this week
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆99Updated last week
• akcorut / kGWASflow
  kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
  ☆39Updated last year
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆55Updated 2 years ago
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆115Updated last year
• enormandeau / gawn
  Genome Annotation Without Nightmares
  ☆45Updated 4 months ago
• odelaneau / shapeit5
  Segmented HAPlotype Estimation and Imputation Tool
  ☆80Updated 9 months ago
• alisi1989 / RFMIX2-Pipeline-to-plot
  Here we present a method to plot the outputs of RFMIX version 2
  ☆23Updated 9 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆113Updated 2 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated last year
• hardingnj / xpclr
  Code to compute the XP-CLR statistic to infer natural selection
  ☆97Updated 2 years ago
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆53Updated last week