Alternatives and similar repositories for gnomix

Users that are interested in gnomix are comparing it to the libraries listed below

• slowkoni / rfmix
  RFMIX - Local Ancestry and Admixture Inference Version 2
  ☆88Updated 2 years ago
• rwdavies / STITCH
  STITCH - Sequencing To Imputation Through Constructing Haplotypes
  ☆83Updated 2 weeks ago
• odelaneau / shapeit5
  Segmented HAPlotype Estimation and Imputation Tool
  ☆85Updated 3 weeks ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• AI-sandbox / neural-admixture
  Rapid population clustering with autoencoders
  ☆78Updated last week
• browning-lab / flare
  The flare program performs local ancestry inference
  ☆40Updated last month
• armartin / ancestry_pipeline
  Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc
  ☆111Updated 3 years ago
• alisi1989 / RFMIX2-Pipeline-to-plot
  Here we present a method to plot the outputs of RFMIX version 2
  ☆27Updated last year
• pwwang / vcfstats
  Powerful statistics for VCF files
  ☆70Updated last month
• szpiech / selscan
  Haplotype based scans for selection
  ☆131Updated last week
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆65Updated last month
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• pangenome / pggb-workshop
  tutorial on pggb
  ☆35Updated 7 months ago
• harvardinformatics / snpArcher
  Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
  ☆81Updated last week
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆34Updated 3 years ago
• EI-CoreBioinformatics / mikado
  Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…
  ☆101Updated 6 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• wdecoster / methplotlib
  Plotting tools for nanopore methylation data
  ☆93Updated last month
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆106Updated 2 months ago
• freeseek / score
  Tools to work with GWAS-VCF summary statistics files
  ☆123Updated last week
• gravelLab / tracts
  A set of tools for modelling ancestry patterns along the genome.
  ☆22Updated this week
• ramachandran-lab / pong
  Fast analysis and visualization of latent clusters in population genetic data
  ☆75Updated 3 years ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆90Updated last year
• YinLiLin / hibayes
  Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies
  ☆50Updated 4 months ago
• parklab / xTea
  Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
  ☆116Updated last month
• odelaneau / shapeit4
  Segmented HAPlotype Estimation and Imputation Tool
  ☆95Updated 2 years ago
• nf-core / isoseq
  Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …
  ☆45Updated last month
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆143Updated last week
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆38Updated 5 months ago