Alternatives and similar repositories for gnomix

Users that are interested in gnomix are comparing it to the libraries listed below

• slowkoni / rfmix
  RFMIX - Local Ancestry and Admixture Inference Version 2
  ☆93Updated 2 years ago
• rwdavies / STITCH
  STITCH - Sequencing To Imputation Through Constructing Haplotypes
  ☆85Updated 2 weeks ago
• AI-sandbox / neural-admixture
  Rapid population clustering with autoencoders
  ☆82Updated last month
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆65Updated last week
• szpiech / selscan
  Haplotype based scans for selection
  ☆136Updated 2 weeks ago
• YinLiLin / hibayes
  Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies
  ☆54Updated 2 months ago
• pangenome / pggb-workshop
  tutorial on pggb
  ☆36Updated 10 months ago
• armartin / ancestry_pipeline
  Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc
  ☆113Updated 4 years ago
• shohei-kojima / MEGAnE
  MEGAnE
  ☆33Updated 2 years ago
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆38Updated 7 months ago
• alisi1989 / RFMIX2-Pipeline-to-plot
  Here we present a method to plot the outputs of RFMIX version 2
  ☆28Updated last year
• browning-lab / hap-ibd
  The hap-ibd program detects identity-by-descent segments in phased genotype data.
  ☆50Updated last year
• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆92Updated last year
• parklab / xTea
  Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
  ☆117Updated 4 months ago
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆75Updated last year
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆110Updated 4 months ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• bergmanlab / drosophila-transposons
  Drosophila transposable element canonical sequences
  ☆29Updated 3 years ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆34Updated 4 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 6 years ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• harvardinformatics / snpArcher
  Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
  ☆85Updated 2 months ago
• freeseek / score
  Tools to work with GWAS-VCF summary statistics files
  ☆126Updated 3 months ago
• EI-CoreBioinformatics / mikado
  Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…
  ☆104Updated 9 months ago
• 10XGenomics / supernova
  10x Genomics Linked-Read Diploid De Novo Assembler
  ☆65Updated 6 years ago
• broadinstitute / gatk-docs
  Documentation archive for GATK tools and workflows
  ☆89Updated 5 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆86Updated last year
• browning-lab / flare
  The flare program performs local ancestry inference
  ☆43Updated 2 weeks ago