A fast, scalable, and accurate local ancestry method.
☆127Sep 3, 2026Updated 2 months ago
Alternatives and similar repositories for gnomix
Users that are interested in gnomix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RFMIX - Local Ancestry and Admixture Inference Version 2☆101Dec 12, 2022Updated 3 years ago
- Here we present a method to plot the outputs of RFMIX version 2☆32Jul 1, 2026Updated 4 months ago
- Hail batch pipeline and scripts for local ancestry inference☆10Oct 6, 2025Updated last year
- The flare program performs local ancestry inference☆50Nov 4, 2025Updated last year
- LASSI-Plus: A program to calculate haplotype frequency spectrum statistics☆13Sep 29, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Rapid population clustering with autoencoders☆90Sep 29, 2025Updated last year
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆12Jun 10, 2019Updated 7 years ago
- Program to simulate admixture between multiple populations☆19Mar 8, 2023Updated 3 years ago
- Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc☆119Sep 13, 2021Updated 5 years ago
- Scripts for implementing the Tractor pipeline☆59Jul 29, 2026Updated 3 months ago
- Recomb-Mix: a local ancestry inference tool☆18Oct 28, 2026Updated last week
- A software package for local ancestry inference and haplotype phasing☆46Apr 20, 2023Updated 3 years ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆63Feb 10, 2026Updated 8 months ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆68Oct 11, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆17Mar 24, 2025Updated last year
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 3 years ago
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 11 months ago
- Statistical inference of recent positive selection using IBD segments☆14Apr 20, 2026Updated 6 months ago
- ☆15Nov 22, 2022Updated 3 years ago
- Haplotype based scans for selection☆151Jun 5, 2026Updated 5 months ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆92Jun 14, 2021Updated 5 years ago
- The hap-ibd program detects identity-by-descent segments in phased genotype data.☆58Jun 11, 2024Updated 2 years ago
- A set of tools for modelling ancestry patterns along the genome.☆24Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Haplotype clustering in phased genotype data☆14Updated this week
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated 2 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Sep 17, 2024Updated 2 years ago
- Sampling and inference of genealogies with recombination☆68Aug 21, 2026Updated 2 months ago
- ☆25Sep 22, 2026Updated last month
- Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)☆47Feb 23, 2026Updated 8 months ago
- Fast analysis and visualization of latent clusters in population genetic data☆77Mar 29, 2022Updated 4 years ago
- Sample Contamination Estimate from VCF☆21Oct 23, 2026Updated last week
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆21Sep 25, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Population-scale genotyping using pangenome graphs☆203Jan 9, 2025Updated last year
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- Easy genetic ancestry predictions in Python☆70Oct 7, 2026Updated 3 weeks ago
- R Functions to calculate power of GWAS studies for a single associated SNP, under various parameters. Suitable for classical (i.e. single…☆23Jul 19, 2018Updated 8 years ago
- Rapid and accurate ancestry inference using SNVs.☆31Aug 15, 2025Updated last year
- Find locations of k-mers☆13Dec 6, 2025Updated 10 months ago
- A statistical framework for reference-free inference of archaic local ancestry☆15Nov 8, 2019Updated 6 years ago