A fast, scalable, and accurate local ancestry method.
☆124Sep 3, 2026Updated 3 weeks ago
Alternatives and similar repositories for gnomix
Users that are interested in gnomix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RFMIX - Local Ancestry and Admixture Inference Version 2☆101Dec 12, 2022Updated 3 years ago
- The flare program performs local ancestry inference☆50Nov 4, 2025Updated 10 months ago
- Scripts for implementing the Tractor pipeline☆56Jul 29, 2026Updated last month
- Here we present a method to plot the outputs of RFMIX version 2☆32Jul 1, 2026Updated 2 months ago
- Recomb-Mix: a local ancestry inference tool☆18Sep 1, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Rapid population clustering with autoencoders☆89Sep 29, 2025Updated 11 months ago
- Statistical inference of recent positive selection using IBD segments☆14Apr 20, 2026Updated 5 months ago
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆12Jun 10, 2019Updated 7 years ago
- Program to simulate admixture between multiple populations☆19Mar 8, 2023Updated 3 years ago
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 10 months ago
- ☆15Nov 22, 2022Updated 3 years ago
- A software package for local ancestry inference and haplotype phasing☆45Apr 20, 2023Updated 3 years ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆63Feb 10, 2026Updated 7 months ago
- Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)☆47Feb 23, 2026Updated 7 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated 2 years ago
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- ☆17Mar 24, 2025Updated last year
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆19Jul 14, 2026Updated 2 months ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆68May 5, 2026Updated 4 months ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆90Jun 14, 2021Updated 5 years ago
- R Functions to calculate power of GWAS studies for a single associated SNP, under various parameters. Suitable for classical (i.e. single…☆23Jul 19, 2018Updated 8 years ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆20Mar 31, 2026Updated 5 months ago
- Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc☆119Sep 13, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆58Mar 7, 2025Updated last year
- The hap-ibd program detects identity-by-descent segments in phased genotype data.☆56Jun 11, 2024Updated 2 years ago
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆18Feb 11, 2025Updated last year
- ☆28Mar 13, 2026Updated 6 months ago
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆27Dec 15, 2025Updated 9 months ago
- A set of tools for modelling ancestry patterns along the genome.☆24Aug 26, 2026Updated 3 weeks ago
- A statistical framework for reference-free inference of archaic local ancestry☆15Nov 8, 2019Updated 6 years ago
- Genetic Relationship And Fingerprinting☆14Feb 6, 2023Updated 3 years ago
- Sampling and inference of genealogies with recombination☆64Aug 21, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆50Jun 26, 2026Updated 2 months ago
- Software for ancestry estimation in unrelated individuals☆26Jan 31, 2026Updated 7 months ago
- Rapid and accurate ancestry inference using SNVs.☆30Aug 15, 2025Updated last year
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- OpenMendel package for haplotyping and imputation☆26Oct 8, 2025Updated 11 months ago
- EM-PCA for Ultra-low Coverage Sequencing Data☆20Dec 18, 2025Updated 9 months ago
- ☆20Oct 2, 2024Updated last year