A fast, scalable, and accurate local ancestry method.
☆110Feb 11, 2026Updated last month
Alternatives and similar repositories for gnomix
Users that are interested in gnomix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RFMIX - Local Ancestry and Admixture Inference Version 2☆97Dec 12, 2022Updated 3 years ago
- The flare program performs local ancestry inference☆46Nov 4, 2025Updated 4 months ago
- Scripts for implementing the Tractor pipeline☆55Sep 4, 2025Updated 6 months ago
- Here we present a method to plot the outputs of RFMIX version 2☆31Aug 14, 2024Updated last year
- Statistical inference of recent positive selection using IBD segments☆14Sep 23, 2025Updated 6 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Rapid population clustering with autoencoders☆87Sep 29, 2025Updated 5 months ago
- Program to simulate admixture between multiple populations☆19Mar 8, 2023Updated 3 years ago
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆11Jun 10, 2019Updated 6 years ago
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 4 months ago
- ☆15Nov 22, 2022Updated 3 years ago
- ☆14Jan 16, 2026Updated 2 months ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- Rapid and accurate ancestry inference using SNVs.☆28Aug 15, 2025Updated 7 months ago
- A software package for local ancestry inference and haplotype phasing☆45Apr 20, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Sample Contamination Estimate from VCF☆20Nov 6, 2024Updated last year
- Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)☆47Feb 23, 2026Updated last month
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆66Feb 11, 2026Updated last month
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆88Jun 14, 2021Updated 4 years ago
- Repository for code to produce phased 1000 Genomes Project haplotypes called against the CHM13v2 T2T reference genome.☆15Jan 31, 2026Updated last month
- The hap-ibd program detects identity-by-descent segments in phased genotype data.☆54Jun 11, 2024Updated last year
- R Functions to calculate power of GWAS studies for a single associated SNP, under various parameters. Suitable for classical (i.e. single…☆22Jul 19, 2018Updated 7 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Mar 7, 2025Updated last year
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆17Feb 11, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc☆116Sep 13, 2021Updated 4 years ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆20Aug 13, 2025Updated 7 months ago
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆24Dec 15, 2025Updated 3 months ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Nov 8, 2019Updated 6 years ago
- A set of tools for modelling ancestry patterns along the genome.☆24Mar 13, 2026Updated last week
- ☆46Mar 18, 2025Updated last year
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆57Feb 10, 2026Updated last month
- OpenMendel package for haplotyping and imputation☆25Oct 8, 2025Updated 5 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Genetic Relationship And Fingerprinting☆14Feb 6, 2023Updated 3 years ago
- ☆21Oct 2, 2024Updated last year
- Haplotype and population structure inference using neural networks.☆29Dec 5, 2024Updated last year
- Low Coverage Calling of Genotypes☆166Updated this week
- ☆27Mar 13, 2026Updated last week
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Dec 18, 2025Updated 3 months ago
- ☆48Oct 17, 2025Updated 5 months ago