Time-stratified f-statistics
☆19Aug 1, 2025Updated last year
Alternatives and similar repositories for twigstats
Users that are interested in twigstats are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆17May 30, 2024Updated 2 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆22Apr 9, 2025Updated last year
- A package for population structure inference from RAD-seq data☆36May 14, 2021Updated 5 years ago
- Find locations of k-mers☆13Dec 6, 2025Updated 10 months ago
- A python implementation of "Risk of non Adaptedness" method (with a bit of R too!)☆10Aug 2, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 3 years ago
- Software for inferring coalescence rates for unphased, low-coverage genomes☆11Jun 11, 2025Updated last year
- ☆10Jan 20, 2026Updated 9 months ago
- ☆14Dec 3, 2024Updated last year
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆15May 29, 2024Updated 2 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆28Jul 8, 2022Updated 4 years ago
- A workflow for integrating ancient lineages into present-day phylogenies.☆32Jul 24, 2026Updated 3 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated last year
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Detecting IBD within low coverage ancient DNA data. Development Repository for software package that contains code for manuscript.☆17Sep 5, 2026Updated last month
- ☆18Dec 3, 2024Updated last year
- The flare program performs local ancestry inference☆50Nov 4, 2025Updated 11 months ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆12Jan 17, 2020Updated 6 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Sep 17, 2024Updated 2 years ago
- A classroom exercise using HGDP SNP data to introduce population structure concepts☆14Jul 27, 2021Updated 5 years ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 9 years ago
- Swift Phenotypic Analysis of Cells☆12Jun 8, 2025Updated last year
- ☆12Oct 25, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 9 months ago
- The Poseidon Community Archive (PCA). Download from here: https://server.poseidon-adna.org/explorer/community-archive NOT through the G…☆18Oct 12, 2026Updated 3 weeks ago
- Tools test whether admixture occurred and more☆236Jul 13, 2026Updated 3 months ago
- This project is a collection of tools for bioinformatic processing of ancient DNA data at the Harvard Medical School Reich Lab.☆29Aug 21, 2026Updated 2 months ago
- Point Cloud Local Ancestry Inference (PCLAI)☆25Jul 23, 2026Updated 3 months ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 8 years ago
- Work for the tree sequence inference paper.☆24Oct 19, 2020Updated 6 years ago
- Pinpoints the mutation favored by selection☆36Nov 2, 2021Updated 5 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Workflow for processing Illumina sequencing runs for ancient human DNA☆28Oct 29, 2020Updated 6 years ago
- Module for analysing admixture graphs☆30Apr 30, 2018Updated 8 years ago
- A merged read deduplication tool capable to perform merged read deduplication on single end data.☆15Sep 4, 2024Updated 2 years ago
- Joint inference of heterozygosity rates and runs of homozygosity☆26Updated this week
- ☆16Jan 6, 2022Updated 4 years ago
- Read, parse and operate different multiple input file formats with OpenVariant☆14Oct 7, 2026Updated 3 weeks ago
- ☆16Mar 20, 2023Updated 3 years ago