leospeidel / twigstatsLinks
Time-stratified f-statistics
☆14Updated 3 weeks ago
Alternatives and similar repositories for twigstats
Users that are interested in twigstats are comparing it to the libraries listed below
Sorting:
- A workflow for integrating ancient lineages into present-day phylogenies.☆29Updated 2 weeks ago
- This project is a collection of tools for bioinformatic processing of ancient DNA data at the Harvard Medical School Reich Lab.☆19Updated last week
- Genealogical Estimation of Variant Age (GEVA)☆29Updated 3 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆52Updated 3 weeks ago
- Tools and Utilities for msmc and msmc2☆48Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Bayesian reconstruction of ancient DNA fragments☆28Updated 11 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- ☆20Updated last year
- ☆59Updated 2 years ago
- Transfer coordinates across genomes☆23Updated last month
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- Python package for detecting positive selective sweeps using time-series genomics sampling data.☆20Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- ☆43Updated 4 months ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 4 months ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 4 years ago
- Graph based multi genome aligner☆47Updated 3 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆39Updated last year
- Dot: An interactive dot plot viewer for comparative genomics☆33Updated 2 years ago
- WinPCA. A package for windowed principal component analysis.☆29Updated this week
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- Ploidy agnostic phasing pipeline and algorithm☆46Updated last year
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆58Updated 7 years ago