Method for dating admixture in ancient DNA specimens
☆33Jan 12, 2022Updated 4 years ago
Alternatives and similar repositories for DATES
Users that are interested in DATES are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆53May 12, 2026Updated 3 months ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆28Oct 29, 2020Updated 5 years ago
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 7 years ago
- Joint inference of heterozygosity rates and runs of homozygosity☆23Updated this week
- A statistical framework for reference-free inference of archaic local ancestry☆15Nov 8, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- analysis and plotting code for "Admixture into and within Africa" by George Busby et al 2016 (eLife)☆12Jun 16, 2016Updated 10 years ago
- A workflow for integrating ancient lineages into present-day phylogenies.☆32Jul 24, 2026Updated 3 weeks ago
- Code repository for the HAYSTAC pipeline☆16Oct 25, 2024Updated last year
- Maximum a posteriori estimate of contamination for ancient samples☆25Aug 6, 2026Updated last week
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 3 years ago
- ☆24Jun 9, 2021Updated 5 years ago
- ☆19Jun 28, 2025Updated last year
- Tools test whether admixture occurred and more☆232Jul 13, 2026Updated last month
- The flare program performs local ancestry inference☆50Nov 4, 2025Updated 9 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Suite of tools for pangenomics built using vg☆25Mar 6, 2026Updated 5 months ago
- ☆100Jun 28, 2026Updated last month
- A course with Jupyter Notebooks for Computational Population Genetics☆10Sep 4, 2022Updated 3 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 2 years ago
- Estimating Effective Migration Surfaces☆112Oct 28, 2023Updated 2 years ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆16Aug 11, 2023Updated 3 years ago
- Documentation archive for GATK tools and workflows☆93Jan 6, 2020Updated 6 years ago
- Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"☆17Nov 24, 2020Updated 5 years ago
- Infer demographic history with the Moran model☆52Jun 14, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆18Dec 3, 2024Updated last year
- ☆48Oct 17, 2025Updated 10 months ago
- ☆13May 13, 2024Updated 2 years ago
- Predicts adaptive introgression using a CNN trained on genotype matrices.☆17Nov 28, 2023Updated 2 years ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆64Feb 10, 2026Updated 6 months ago
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage☆21Nov 18, 2023Updated 2 years ago
- signatselect: Identifying signatures of selection☆12Dec 3, 2019Updated 6 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 9 months ago
- Pinpoints the mutation favored by selection☆35Nov 2, 2021Updated 4 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- Scripts and resources for the haploblocks manuscript☆18Mar 20, 2020Updated 6 years ago
- A software package for local ancestry inference and haplotype phasing☆45Apr 20, 2023Updated 3 years ago
- ☆19May 27, 2022Updated 4 years ago
- Infer the age of ancestral nodes in a tree sequence.☆27Jun 30, 2026Updated last month