CshlSiepelLab / argweaverLinks
Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
☆14Updated 2 years ago
Alternatives and similar repositories for argweaver
Users that are interested in argweaver are comparing it to the libraries listed below
Sorting:
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- machine learning applications for dadi☆16Updated 10 months ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆16Updated 8 months ago
- Infer demographic history with the Moran model☆50Updated 5 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆56Updated 5 months ago
- Tools and Utilities for msmc and msmc2☆49Updated 4 months ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆29Updated 6 years ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Updated 6 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 7 years ago
- Haplotype and population structure inference using neural networks.☆27Updated last year
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Updated this week
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- ☆45Updated last month
- ☆25Updated last year
- ☆65Updated 3 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- Genealogical Estimation of Variant Age (GEVA)☆31Updated 4 years ago
- ☆13Updated 4 years ago
- Bayesian reconstruction of ancient DNA fragments☆30Updated last year
- Sampling and inference of genealogies with recombination☆46Updated 5 months ago
- ☆14Updated 2 years ago
- A reimplementation of a classical PSMC method in python for educational purposes☆17Updated last year
- Code and binaries related to processing haplotagging data☆15Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Updated 12 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year