CshlSiepelLab / argweaverLinks
Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
☆14Updated 2 years ago
Alternatives and similar repositories for argweaver
Users that are interested in argweaver are comparing it to the libraries listed below
Sorting:
- machine learning applications for dadi☆16Updated 10 months ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 6 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Updated 12 years ago
- Tools and Utilities for msmc and msmc2☆49Updated 4 months ago
- Infer demographic history with the Moran model☆50Updated 6 months ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆29Updated 6 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆16Updated 8 months ago
- ☆46Updated 2 months ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Updated 2 weeks ago
- Haplotype and population structure inference using neural networks.☆27Updated last year
- ☆25Updated last year
- Genealogical Estimation of Variant Age (GEVA)☆31Updated 4 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Updated this week
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Updated 5 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 7 years ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Updated 6 years ago
- Bayesian reconstruction of ancient DNA fragments☆30Updated last year
- ☆13Updated 4 years ago
- ☆31Updated 6 years ago
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 3 months ago
- Genetic maps in autopolyploids☆31Updated 6 months ago
- A reimplementation of a classical PSMC method in python for educational purposes☆17Updated last year
- ☆14Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Updated 2 years ago
- ☆44Updated last year