Alternatives and similar repositories for argweaver

Users that are interested in argweaver are comparing it to the libraries listed below

• lntran26 / donni
  machine learning applications for dadi
  ☆15Updated 4 months ago
• avaughn271 / CLUES2
  The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.
  ☆11Updated last month
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 6 years ago
• LohmuellerLab / fitdadi
  Tools for inference of the DFE with dadi
  ☆14Updated 4 years ago
• Sendrowski / fastDFE
  Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…
  ☆16Updated last week
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• jesvedberg / Ancestry_HMM-S
  Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
  ☆17Updated last year
• sriramlab / ArchIE
  A statistical framework for reference-free inference of archaic local ancestry
  ☆16Updated 5 years ago
• ComparativeGenomicsToolkit / neutral-model-estimator
  Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit
  ☆11Updated 5 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆19Updated 7 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• trevorcousins / cobraa
  cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequen…
  ☆17Updated this week
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆19Updated 5 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• simonhmartin / dfs
  D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
  ☆16Updated 4 years ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆25Updated 5 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 6 months ago
• GenisGE / evalAdmix
  ☆13Updated last year
• mscampbell / Genome_annotation
  These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…
  ☆15Updated 7 years ago
• popgenmethods / SINGER
  Sampling and inference of genealogies with recombination
  ☆29Updated 8 months ago
• kelleyharris / Inferring-demography-from-IBS
  A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)
  ☆15Updated 11 years ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆29Updated 3 years ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆18Updated 3 weeks ago
• mcstitzer / maize_genomic_ecosystem
  ☆11Updated 2 years ago
• malthesr / winsfs
  Site frequency spectrum estimation based on window expectation-maximisation algorithm
  ☆13Updated 2 years ago
• owensgl / reformat
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆13Updated 3 months ago
• yangjl / pseudoRef
  Make Pseudo-Reference Genome from VCF/BCF
  ☆14Updated 4 years ago
• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 6 years ago