Analysis of inference methods on standard population models
☆25Dec 3, 2021Updated 4 years ago
Alternatives and similar repositories for analysis
Users that are interested in analysis are comparing it to the libraries listed below
Sorting:
- A library of standard population genetic models☆139Updated this week
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- intro to programming for IE2 evolution students☆12Jan 31, 2024Updated 2 years ago
- Tools for describing and manipulating demographic models.☆19Updated this week
- Faster multispecies coalescent inference using multilocus data☆14Aug 13, 2023Updated 2 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Nov 30, 2025Updated 3 months ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Population genetic simulations in R☆63Jan 28, 2026Updated last month
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆88Jun 14, 2021Updated 4 years ago
- Haplotype and population structure inference using neural networks.☆28Dec 5, 2024Updated last year
- ☆57Feb 14, 2022Updated 4 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Sep 17, 2024Updated last year
- deep learning prediction of geographic location from individual genome sequences☆52Jan 20, 2025Updated last year
- An R interface for the ADMIXTOOLS software☆35Nov 24, 2025Updated 3 months ago
- Forward-time simulation in Python using fwdpp☆31Mar 3, 2026Updated 2 weeks ago
- ☆46Mar 18, 2025Updated last year
- A statistical framework for reference-free inference of archaic local ancestry☆16Nov 8, 2019Updated 6 years ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆56Feb 10, 2026Updated last month
- ☆17Dec 2, 2015Updated 10 years ago
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 6 years ago
- Genotype likelihood simulator for VCF/BCF files☆16May 7, 2025Updated 10 months ago
- Simulate ARGs and genomic sequence data using population genetic models☆210Mar 6, 2026Updated 2 weeks ago
- TESS3 is a fast and efficient program for estimating spatial population structure based on geographically constrained non-negative matrix…☆22Jun 21, 2023Updated 2 years ago
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated 11 months ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- Implementation of the multiple sequential markovian coalescent☆91Aug 5, 2025Updated 7 months ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 2 years ago
- Lesson for the shell for genomics☆10Jan 12, 2021Updated 5 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆60Jun 27, 2025Updated 8 months ago
- The flare program performs local ancestry inference☆46Nov 4, 2025Updated 4 months ago
- Segmented HAPlotype Estimation and Imputation Tool☆98Aug 28, 2023Updated 2 years ago
- Selection outlier scan with population branch statistic☆15Feb 21, 2024Updated 2 years ago
- A Suite of Packages for Analysis of Big Genomic Data☆34Jan 20, 2025Updated last year
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 2 years ago
- Fast, Accurate and Memory-Efficient Principal Component Analysis For Tera-scale Dataset☆51Updated this week
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆16May 19, 2023Updated 2 years ago
- feature-based deep learning for the identification of selective sweeps☆59Feb 7, 2026Updated last month