Alternatives and similar repositories for analysis

Users that are interested in analysis are comparing it to the libraries listed below

• ANGSD / NgsRelate
  ☆43Updated 4 months ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 7 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆29Updated 4 years ago
• bodkan / admixr
  An R package for reproducible and automated ADMIXTOOLS analyses
  ☆33Updated 5 months ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated last year
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 9 years ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆19Updated 7 years ago
• gbradburd / SpaceMix
  ☆30Updated 2 years ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆42Updated 2 weeks ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆65Updated 3 weeks ago
• fgvieira / ngsF-HMM
  Estimation of per-individual inbreeding tracts under a probabilistic framework
  ☆13Updated last year
• MesserLab / SLiM-Extras
  Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself
  ☆43Updated 3 months ago
• kr-colab / locator
  deep learning prediction of geographic location from individual genome sequences
  ☆51Updated 6 months ago
• popgenmethods / ldpop
  Two locus likelihoods and ARGs under changing population size
  ☆14Updated 4 months ago
• evolgenomics / haplotagging
  Code and binaries related to processing haplotagging data
  ☆15Updated 3 years ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆36Updated last year
• jjberg2 / PolygenicAdaptationCode
  ☆20Updated 4 years ago
• bodkan / slendr
  Population genetic simulations in R 🌍
  ☆60Updated this week
• lntran26 / donni
  machine learning applications for dadi
  ☆15Updated 6 months ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• hemstrow / snpR
  ☆30Updated 2 months ago
• regevs / gamma_smc
  ☆20Updated last year
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆33Updated 4 years ago
• xin-huang / dadi-cli
  Automated and distributed population genetic model inference from allele frequency spectra
  ☆17Updated this week
• liamrevell / learnPopGen
  initial commit
  ☆26Updated 2 years ago
• chrchang / eigensoft
  Experimental EIGENSOFT performance improvements.
  ☆22Updated 10 years ago
• DReichLab / adna-workflow
  Workflow for processing Illumina sequencing runs for ancient human DNA
  ☆22Updated 4 years ago
• ANGSD-wrapper / angsd-wrapper
  Utilities for analyzing next generation sequencing data.
  ☆15Updated 4 years ago
• CshlSiepelLab / argweaver
  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
  ☆13Updated 2 years ago
• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆19Updated 4 years ago