Analysis of inference methods on standard population models
☆25Dec 3, 2021Updated 4 years ago
Alternatives and similar repositories for analysis
Users that are interested in analysis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A library of standard population genetic models☆144Jun 17, 2026Updated last month
- intro to programming for IE2 evolution students☆12Jan 31, 2024Updated 2 years ago
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- Tools for describing and manipulating demographic models.☆19Mar 30, 2026Updated 3 months ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆69Mar 27, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Faster multispecies coalescent inference using multilocus data☆15Aug 13, 2023Updated 2 years ago
- Population genetic simulations in R☆64Jul 3, 2026Updated 2 weeks ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆89Jun 14, 2021Updated 5 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Sep 17, 2024Updated last year
- ☆58Feb 14, 2022Updated 4 years ago
- Haplotype and population structure inference using neural networks.☆30Dec 5, 2024Updated last year
- deep learning prediction of geographic location from individual genome sequences☆54Jan 20, 2025Updated last year
- Forward-time simulation in Python using fwdpp☆33Jul 1, 2026Updated 2 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- An R interface for the ADMIXTOOLS software☆37Nov 24, 2025Updated 7 months ago
- ☆49Jun 26, 2026Updated 3 weeks ago
- A statistical framework for reference-free inference of archaic local ancestry☆15Nov 8, 2019Updated 6 years ago
- ☆17Dec 2, 2015Updated 10 years ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆64Feb 10, 2026Updated 5 months ago
- Simulate ARGs and genomic sequence data using population genetic models☆217Jun 30, 2026Updated 3 weeks ago
- Genotype likelihood simulator for VCF/BCF files☆16May 7, 2025Updated last year
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 7 years ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- Implementation of the multiple sequential markovian coalescent☆92Aug 5, 2025Updated 11 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- Lesson for the shell for genomics☆11Jan 12, 2021Updated 5 years ago
- Segmented HAPlotype Estimation and Imputation Tool☆100May 19, 2026Updated 2 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆61Jun 27, 2025Updated last year
- Selection outlier scan with population branch statistic☆15Feb 21, 2024Updated 2 years ago
- The flare program performs local ancestry inference☆49Nov 4, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- bcftools-compatible querying and format conversion for VCF Zarr☆26Jun 8, 2026Updated last month
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 3 years ago
- Fast, Accurate and Memory-Efficient Principal Component Analysis All in One For Large-scale Dataset☆54Jul 10, 2026Updated last week
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- ☆15Jul 17, 2019Updated 7 years ago
- feature-based deep learning for the identification of selective sweeps☆59Mar 31, 2026Updated 3 months ago
- R package to run BEAST2☆11Dec 8, 2025Updated 7 months ago