Alternatives and similar repositories for analysis:

Users that are interested in analysis are comparing it to the libraries listed below

• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 3 years ago
• CMPG / signet
  An R package to detect selection in biological pathways
  ☆14Updated 11 months ago
• jjberg2 / PolygenicAdaptationCode
  ☆20Updated 4 years ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 6 years ago
• ANGSD / NgsRelate
  ☆43Updated last year
• timbeissinger / Maize-Teo-Scripts
  ☆17Updated 9 years ago
• DReichLab / adna-workflow
  Workflow for processing Illumina sequencing runs for ancient human DNA
  ☆20Updated 4 years ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆55Updated 2 months ago
• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆18Updated 3 years ago
• devillemereuil / bayescenv
  BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.
  ☆19Updated 7 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆41Updated 5 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆36Updated last year
• MyersGroup / relate
  Software for estimating genome-wide genealogies for thousands of samples
  ☆29Updated 3 months ago
• LohmuellerLab / fitdadi
  Tools for inference of the DFE with dadi
  ☆14Updated 3 years ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• TCLamnidis / AdmixturePlotter
  An R script to generate plots for ADMIXTURE runs, for multiple K values.
  ☆17Updated last year
• hemstrow / snpR
  ☆29Updated last week
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 4 months ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆31Updated 3 years ago
• delt0r / msms
  A coalsecent simulator with selection
  ☆19Updated 4 years ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆39Updated 3 months ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 3 years ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆33Updated 3 years ago
• ulasisik / balancing-selection
  ☆13Updated 3 years ago
• clwgg / nQuire
  A statistical framework for ploidy estimation using NGS short-read data
  ☆55Updated 6 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆46Updated last year
• xin-huang / dadi-cli
  Automated and distributed population genetic model inference from allele frequency spectra
  ☆15Updated this week
• pievos101 / PopGenome
  An Efficient Swiss Army Knife for Population Genomic Analyses in R
  ☆33Updated 7 months ago
• regevs / gamma_smc
  ☆18Updated last year
• popgenmethods / SINGER
  Sampling and inference of genealogies with recombination
  ☆28Updated 3 months ago