FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the age of IBD segments and scales to large biobank datasets. https://doi.org/10.1038/s41467-020-19588-x
☆14Sep 2, 2021Updated 4 years ago
Alternatives and similar repositories for FastSMC
Users that are interested in FastSMC are comparing it to the libraries listed below
Sorting:
- Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)☆47Updated this week
- GWAS genetics Fine-mapping method☆26Oct 16, 2024Updated last year
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 7 months ago
- faster haplotype-based admixture inference and dating software☆10Nov 25, 2025Updated 3 months ago
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 2 years ago
- Ascertained Sequentially Markovian Coalescent☆16Oct 22, 2025Updated 4 months ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆14Sep 4, 2023Updated 2 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆19Nov 29, 2022Updated 3 years ago
- Computes various SV statistics☆14Oct 12, 2023Updated 2 years ago
- ☆13Mar 7, 2021Updated 4 years ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 2 years ago
- The flare program performs local ancestry inference☆46Nov 4, 2025Updated 3 months ago
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Apr 13, 2021Updated 4 years ago
- Rust bindings for the tskit library☆16Feb 1, 2026Updated 3 weeks ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Nov 26, 2019Updated 6 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 5 months ago
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆20Mar 7, 2025Updated 11 months ago
- An application to compare genetic maps with D3 & Shiny☆22Feb 28, 2023Updated 3 years ago
- ☆21Jan 11, 2024Updated 2 years ago
- A series of scripts to automate sequence workflows☆19Jan 24, 2026Updated last month
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆62Jan 29, 2026Updated last month
- The hap-ibd program detects identity-by-descent segments in phased genotype data.☆53Jun 11, 2024Updated last year
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆23Jun 14, 2024Updated last year
- Parallel implementation of the LAST aligner☆18Nov 27, 2016Updated 9 years ago
- ☆25Dec 18, 2024Updated last year
- circos pipeline☆20May 8, 2021Updated 4 years ago
- CNV screening and annotation tool☆25Oct 31, 2016Updated 9 years ago
- software for the MAPS method☆25Mar 20, 2019Updated 6 years ago
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- ☆27Aug 29, 2025Updated 6 months ago
- SV calling for diploid assemblies☆31Mar 22, 2024Updated last year
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆57Mar 19, 2020Updated 5 years ago
- A python package for showing JBrowse views☆26Jan 3, 2024Updated 2 years ago
- ☆29Mar 5, 2024Updated last year
- UMN tracker production software for Mu2e☆11Jan 29, 2025Updated last year
- Bulked-Segregant Analysis using vcf file with or without parents☆32Dec 20, 2024Updated last year
- 🍶 Genome assembly with short sequence reads☆25Jan 21, 2024Updated 2 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data☆29Aug 2, 2022Updated 3 years ago