PalamaraLab / FastSMCLinks
FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the age of IBD segments and scales to large biobank datasets. https://doi.org/10.1038/s41467-020-19588-x
☆14Updated 3 years ago
Alternatives and similar repositories for FastSMC
Users that are interested in FastSMC are comparing it to the libraries listed below
Sorting:
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 2 years ago
- ☆20Updated last year
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated last month
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- ☆23Updated 7 months ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Ascertained Sequentially Markovian Coalescent☆16Updated 8 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Tools for merging Tandem Repeat VCF files☆32Updated 3 months ago
- Structural variant (SV) analysis tools☆36Updated last year
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Repository for pipeline code☆26Updated last year
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 6 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 4 months ago
- Sweep Inference Framework (controlling for correlation)☆29Updated last year
- Population-wide Deletion Calling☆35Updated 3 months ago
- Haplotype and population structure inference using neural networks.☆27Updated 8 months ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆11Updated 5 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- ☆13Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Jupyter Notebooks Using PGR-TK for various human pangenome analysis tasks☆16Updated 2 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- ☆51Updated 5 years ago