Alternatives and similar repositories for FastSMC:

Users that are interested in FastSMC are comparing it to the libraries listed below

• lorinanthony / MAPIT
  Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
  ☆14Updated 2 years ago
• PalamaraLab / ASMC
  Ascertained Sequentially Markovian Coalescent
  ☆16Updated 4 months ago
• browning-lab / ibd-ends
  The ibd-ends program performs probabilistic estimation of identity-by-descent segment endpoints.
  ☆10Updated 2 years ago
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆32Updated last year
• msesia / knockoffgwas
  A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.
  ☆14Updated 2 years ago
• gjun / muCNV
  ☆20Updated last year
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 4 years ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 9 months ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆27Updated 3 years ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 6 months ago
• hellenthal-group-UCL / fastGLOBETROTTER
  faster haplotype-based admixture inference and dating software
  ☆9Updated 3 years ago
• HTGenomeAnalysisUnit / SCE-VCF
  Sample Contamination Estimate from VCF
  ☆19Updated 4 months ago
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 3 months ago
• popgenmethods / ldpop
  Two locus likelihoods and ARGs under changing population size
  ☆13Updated 2 weeks ago
• dellytools / svprops
  Computes various SV statistics
  ☆14Updated last year
• lganel / SVScore
  Prioritize structural variants based on CADD scores
  ☆29Updated 4 years ago
• casanova-lab / NHC
  NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity
  ☆10Updated last year
• Gege7177 / Dot2dot
  Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery
  ☆11Updated 2 years ago
• gymreklab / snpstr-imputation
  Scripts for analyses and figures for SNP STR Imputation manuscript
  ☆12Updated 6 years ago
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆29Updated 8 months ago
• ryhui / imputation-pipeline
  ☆10Updated 4 years ago
• ALLBio / allbiotc2
  Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.
  ☆24Updated 10 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆28Updated last year
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆29Updated 11 months ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆28Updated 8 months ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 6 years ago
• fritzsedlazeck / SURVIVOR_ant
  A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)
  ☆13Updated 7 years ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆31Updated last month
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆49Updated 7 months ago