23andMe / phasedibdLinks
Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)
☆45Updated 2 years ago
Alternatives and similar repositories for phasedibd
Users that are interested in phasedibd are comparing it to the libraries listed below
Sorting:
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 5 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 10 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- Evaluation of phasing performance☆23Updated 7 years ago
- The hap-ibd program detects identity-by-descent segments in phased genotype data.☆48Updated last year
- Hitting associations with k-mers☆44Updated 3 years ago
- Structural variant caller☆55Updated 3 years ago
- ☆64Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆51Updated 6 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆64Updated last week
- Toolkit for genome-wide analysis of tandem repeats☆58Updated last week
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆57Updated 10 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- ☆35Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Evolutionary Transcriptomics with R☆45Updated this week
- Structural variant merging tool☆55Updated last year
- Here we present a method to plot the outputs of RFMIX version 2☆27Updated last year
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆36Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆57Updated 3 weeks ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Structural variant (SV) analysis tools☆38Updated last year
- R-package: Calculation of haplotype blocks and libraries☆33Updated 2 months ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Pipeline for structural variation detection in cohorts☆51Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Genealogical Estimation of Variant Age (GEVA)☆31Updated 4 years ago