Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)
☆47Feb 23, 2026Updated 3 months ago
Alternatives and similar repositories for phasedibd
Users that are interested in phasedibd are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆15Sep 2, 2021Updated 4 years ago
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- OpenMendel package for haplotyping and imputation☆25Oct 8, 2025Updated 7 months ago
- Implementation of Positional Burrows-Wheeler Transform for genetic data☆116Nov 20, 2025Updated 6 months ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The hap-ibd program detects identity-by-descent segments in phased genotype data.☆55Jun 11, 2024Updated last year
- ☆17Oct 18, 2024Updated last year
- ☆32May 7, 2026Updated 2 weeks ago
- The flare program performs local ancestry inference☆47Nov 4, 2025Updated 6 months ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆12Mar 20, 2026Updated 2 months ago
- Sweep Inference Framework (controlling for correlation)☆28Jul 10, 2024Updated last year
- Simulate ARGs and genomic sequence data using population genetic models☆215Apr 15, 2026Updated last month
- A fast, scalable, and accurate local ancestry method.☆116May 15, 2026Updated last week
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆20Apr 9, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The SPrime program identifies variants that are introgressed from archaic populations.☆28May 21, 2022Updated 4 years ago
- Algorithm for rapid, phase-free detection of long identical by descent segments☆23Mar 13, 2026Updated 2 months ago
- ☆12Sep 14, 2025Updated 8 months ago
- ☆20Mar 20, 2026Updated 2 months ago
- Statistical inference of recent positive selection using IBD segments☆14Apr 20, 2026Updated last month
- Low Coverage Calling of Genotypes☆169May 11, 2026Updated 2 weeks ago
- ☆21Jan 11, 2024Updated 2 years ago
- xSqueezeIt VCF/BCF Genotype data compressor with extensible compute friendly format☆14Aug 5, 2025Updated 9 months ago
- ☆28Mar 13, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆43Apr 18, 2026Updated last month
- Infer a tree sequence from genetic variation data.☆63Apr 1, 2026Updated last month
- Genetic Relationship And Fingerprinting☆14Feb 6, 2023Updated 3 years ago
- Linear time detection of Identity by Descent☆13Jul 22, 2011Updated 14 years ago
- GERMLINE is an algorithm for inferring long shared segments of Identity by Descent (IBD) between pairs of individuals in a large populati…☆15Apr 5, 2019Updated 7 years ago
- Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler