23andMe / phasedibdLinks
Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)
☆43Updated last year
Alternatives and similar repositories for phasedibd
Users that are interested in phasedibd are comparing it to the libraries listed below
Sorting:
- R-package: Calculation of haplotype blocks and libraries☆31Updated 4 months ago
- Hitting associations with k-mers☆45Updated 3 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- ☆59Updated 2 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Evaluation of phasing performance☆23Updated 7 years ago
- Sweep Inference Framework (controlling for correlation)☆29Updated last year
- Fast inference of fine-scale recombination rates based on fused-LASSO☆51Updated 3 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 7 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated last month
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Evolutionary Transcriptomics with R☆44Updated last week
- PERF is an Exhaustive Repeat Finder☆34Updated 4 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- CoGe (Comparative Genomics) Platform☆44Updated 3 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated last year
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- TIDDIT - structural variant calling☆74Updated 3 months ago
- A python parser to simplify and build the VCF (Variant Call Format).☆49Updated 8 months ago
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Updated last month
- An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.☆37Updated 2 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 8 months ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆64Updated this week
- The SPrime program identifies variants that are introgressed from archaic populations.☆25Updated 3 years ago
- Toolkit for genome-wide analysis of tandem repeats☆58Updated 4 months ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆42Updated 2 weeks ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago