Maximum a posteriori estimate of contamination for ancient samples
☆26Sep 28, 2026Updated last month
Alternatives and similar repositories for schmutzi
Users that are interested in schmutzi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆24Jun 9, 2021Updated 5 years ago
- mapping pipeline for ancient DNA☆34Oct 22, 2026Updated last week
- ☆52May 12, 2026Updated 5 months ago
- ☆17May 30, 2024Updated 2 years ago
- ☆13Oct 19, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆16Aug 6, 2024Updated 2 years ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆28Oct 29, 2020Updated 6 years ago
- command-line tools for the management of genotype likelihoods and allele counts☆30Jun 17, 2026Updated 4 months ago
- Code repository for the HAYSTAC pipeline☆18Oct 25, 2024Updated 2 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- Compute postmortem damage patterns and decontaminate ancient genomes☆23Apr 20, 2021Updated 5 years ago
- Parsimony on tree sequences☆13Jun 27, 2025Updated last year
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- ☆14Jul 24, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Jul 17, 2019Updated 7 years ago
- A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage☆21Nov 18, 2023Updated 2 years ago
- Work for the tree sequence inference paper.☆24Oct 19, 2020Updated 6 years ago
- an R package for admixture analyses☆19May 15, 2015Updated 11 years ago
- A workflow for integrating ancient lineages into present-day phylogenies.☆32Jul 24, 2026Updated 3 months ago
- Infer the age of ancestral nodes in a tree sequence.☆27Updated this week
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 13 years ago
- Suite of tools for pangenomics built using vg☆25Oct 9, 2026Updated 3 weeks ago
- A merged read deduplication tool capable to perform merged read deduplication on single end data.☆14Sep 4, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Module for analysing admixture graphs☆30Apr 30, 2018Updated 8 years ago
- ☆18Dec 3, 2024Updated last year
- Program for analysing NGS data.☆269Oct 22, 2026Updated last week
- A statistical framework for reference-free inference of archaic local ancestry☆15Nov 8, 2019Updated 6 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆51Oct 19, 2026Updated last week
- gargammel is an ancient DNA simulator☆39Sep 25, 2026Updated last month
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆52Jul 14, 2025Updated last year
- Haplotype and population structure inference using neural networks.☆30Dec 5, 2024Updated last year
- Low Coverage Calling of Genotypes☆181Oct 14, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Ancient microbiome snakemake workflow☆34Jun 12, 2026Updated 4 months ago
- Detecting IBD within low coverage ancient DNA data. Development Repository for software package that contains code for manuscript.☆17Sep 5, 2026Updated last month
- Fast inference of fine-scale recombination rates based on fused-LASSO☆63Feb 10, 2026Updated 8 months ago
- cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequen…☆26Jun 17, 2025Updated last year
- neural network for estimating demographic maps from SNPs☆13Oct 13, 2026Updated 2 weeks ago
- A python script to calculate the relative coverage of X and Y chromosomes, and their associated error bars, from the depth of coverage at…☆17May 2, 2023Updated 3 years ago
- ☆17Nov 19, 2021Updated 4 years ago