grenaud / schmutziLinks
Maximum a posteriori estimate of contamination for ancient samples
☆21Updated 7 months ago
Alternatives and similar repositories for schmutzi
Users that are interested in schmutzi are comparing it to the libraries listed below
Sorting:
- Workflow for processing Illumina sequencing runs for ancient human DNA☆21Updated 4 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 2 weeks ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- ☆43Updated 2 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 weeks ago
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Updated 4 months ago
- Short scripts for converting genetic data between formats.☆29Updated 2 years ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Updated 5 years ago
- ☆20Updated last year
- Fast inference of fine-scale recombination rates based on fused-LASSO☆51Updated 2 months ago
- Two locus likelihoods and ARGs under changing population size☆14Updated 2 months ago
- An R script to generate plots for ADMIXTURE runs, for multiple K values.☆19Updated 3 months ago
- Method for dating admixture in ancient DNA specimens☆27Updated 3 years ago
- Clustering phylogenetic trees with python☆25Updated 9 months ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 2 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Demographic analysis of Brassica oleracea☆10Updated last week
- Module for analysing admixture graphs☆28Updated 7 years ago
- Suite of tools for pangenomics built using vg☆22Updated last month
- Software to call ROHs☆16Updated last month
- Copy number variation detection using NGS data.☆15Updated last year
- Infer demographic history with the Moran model☆47Updated 3 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated this week
- ☆20Updated 4 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 6 years ago
- Software for ancestry estimation in unrelated individuals☆20Updated 3 weeks ago