Alternatives and similar repositories for schmutzi:

Users that are interested in schmutzi are comparing it to the libraries listed below

• DReichLab / adna-workflow
  Workflow for processing Illumina sequencing runs for ancient human DNA
  ☆20Updated 4 years ago
• ANGSD / NgsRelate
  ☆43Updated last month
• regevs / gamma_smc
  ☆18Updated last year
• TCLamnidis / AdmixturePlotter
  An R script to generate plots for ADMIXTURE runs, for multiple K values.
  ☆18Updated last month
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆26Updated 6 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆49Updated 2 months ago
• fgvieira / ngsLD
  Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
  ☆47Updated last year
• AgResearch / KGD
  Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
  ☆21Updated last month
• sriramlab / ArchIE
  A statistical framework for reference-free inference of archaic local ancestry
  ☆16Updated 5 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated last month
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• mathii / gdc
  Short scripts for converting genetic data between formats.
  ☆29Updated 2 years ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 6 years ago
• priyamoorjani / DATES
  Method for dating admixture in ancient DNA specimens
  ☆25Updated 3 years ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 7 months ago
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 6 years ago
• lstevison / vcf-conversion-tools
  Tools to convert to and from vcf format
  ☆14Updated 7 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• mfumagalli / Copenhagen
  Analysis of genotyping and next-generation sequencing data in medical and population genetics
  ☆23Updated 2 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆50Updated 6 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• tsackton / linked-selection
  ☆24Updated 7 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• stschiff / msmc
  Implementation of the multiple sequential markovian coalescent
  ☆87Updated last year
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆47Updated 3 weeks ago
• evotools / hapbin
  Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)
  ☆44Updated 5 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆28Updated 4 years ago