Alternatives and similar repositories for schmutzi

Users that are interested in schmutzi are comparing it to the libraries listed below

• DReichLab / adna-workflow
  Workflow for processing Illumina sequencing runs for ancient human DNA
  ☆25Updated 5 years ago
• ANGSD / NgsRelate
  ☆45Updated 9 months ago
• regevs / gamma_smc
  ☆21Updated last year
• priyamoorjani / DATES
  Method for dating admixture in ancient DNA specimens
  ☆28Updated 3 years ago
• standard-aaron / clues
  Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data
  ☆26Updated 3 years ago
• sriramlab / ArchIE
  A statistical framework for reference-free inference of archaic local ancestry
  ☆16Updated 6 years ago
• TCLamnidis / AdmixturePlotter
  An R script to generate plots for ADMIXTURE runs, for multiple K values.
  ☆19Updated 10 months ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆29Updated 7 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆50Updated 6 months ago
• popsim-consortium / analysis
  Analysis of inference methods on standard population models
  ☆25Updated 4 years ago
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 7 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 7 years ago
• pomo-dev / PoMo
  Implementation of a polymorphism aware phylogenetic model using HYPHY
  ☆19Updated 3 years ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆28Updated 4 years ago
• LynchLab / MAPGD
  A program for the Maximum-likelihood analysis of population genomic data.
  ☆30Updated 4 years ago
• stschiff / msmc
  Implementation of the multiple sequential markovian coalescent
  ☆89Updated 5 months ago
• mathii / gdc
  Short scripts for converting genetic data between formats.
  ☆30Updated 3 years ago
• augusto-garcia / onemap
  Repository created to host the R package OneMap: software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and b…
  ☆38Updated 2 years ago
• evotools / hapbin
  Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)
  ☆45Updated 6 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆53Updated 7 years ago
• shahab-sarmashghi / Skmer
  Fast and accurate tool for estimating genomic distances between genome-skims
  ☆47Updated 2 years ago
• grenaud / glactools
  command-line tools for the management of genotype likelihoods and allele counts
  ☆30Updated last year
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆57Updated 6 months ago
• btmartin721 / raxml_ascbias
  Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
  ☆16Updated last year
• pontussk / popstats
  Population genetic summary statistics
  ☆40Updated 2 years ago
• champost / ABLE
  ABLE - Approximate Blockwise Likelihood Estimation
  ☆17Updated 7 years ago
• russcd / Ancestry_HMM
  ☆32Updated 3 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆49Updated 5 months ago
• stschiff / sequenceTools
  ☆50Updated 2 months ago
• bcm-uga / pcadapt
  Performing highly efficient genome scans for local adaptation with R package pcadapt v4
  ☆43Updated 5 months ago