Alternatives and similar repositories for schmutzi

Users that are interested in schmutzi are comparing it to the libraries listed below

• DReichLab / adna-workflow
  Workflow for processing Illumina sequencing runs for ancient human DNA
  ☆21Updated 4 years ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated 2 months ago
• priyamoorjani / DATES
  Method for dating admixture in ancient DNA specimens
  ☆26Updated 3 years ago
• mathii / gdc
  Short scripts for converting genetic data between formats.
  ☆29Updated 2 years ago
• TCLamnidis / AdmixturePlotter
  An R script to generate plots for ADMIXTURE runs, for multiple K values.
  ☆19Updated 2 months ago
• bioinfologics / satsuma2
  FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing
  ☆43Updated 3 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• regevs / gamma_smc
  ☆19Updated last year
• Rosemeis / emu
  EM-PCA for Ultra-low Coverage Sequencing Data
  ☆18Updated 3 months ago
• ANGSD / NgsRelate
  ☆43Updated 2 months ago
• kgori / treeCl
  Clustering phylogenetic trees with python
  ☆25Updated 9 months ago
• mojaveazure / angsd-wrapper
  Utilities for analyzing next generation sequencing data
  ☆17Updated 6 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆26Updated 6 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆51Updated 2 weeks ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• fgvieira / ngsLD
  Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
  ☆47Updated last year
• enormandeau / mapcomp
  Genetic Map Comparison
  ☆20Updated 2 years ago
• mailund / admixture_graph
  Module for analysing admixture graphs
  ☆28Updated 7 years ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 8 months ago
• DivyaratanPopli / Kinship_Inference
  This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.
  ☆9Updated 9 months ago
• russcd / Ancestry_HMM
  ☆29Updated 2 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• ibest / ARC
  Assembly by Reduced Complexity (ARC)
  ☆41Updated 9 years ago
• popgenmethods / LDhelmet
  Software package for estimating fine-scale recombination rate.
  ☆14Updated 3 years ago
• standard-aaron / clues
  Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data
  ☆25Updated 2 years ago
• jjberg2 / PolygenicAdaptationCode
  ☆20Updated 4 years ago
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆32Updated 4 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆50Updated 6 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆79Updated 9 months ago