DReichLab / AdmixTools
Tools test whether admixture occurred and more
☆183Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for AdmixTools
- SMC++ infers population history from whole-genome sequence data.☆152Updated 10 months ago
- Program for analysing NGS data.☆231Updated last week
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆156Updated 2 years ago
- Haplotype based scans for selection☆114Updated 3 weeks ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆136Updated 3 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆162Updated last week
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆186Updated 3 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆191Updated 10 months ago
- Eigen tools by Nick Patterson and Alkes Price lab☆180Updated last year
- A library for running k-mers based GWAS☆106Updated 3 weeks ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆294Updated last year
- Recovering genes from targeted sequence capture data☆113Updated 3 weeks ago
- ☆76Updated 3 years ago
- Scripts for analysis used during the course☆81Updated 6 months ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆119Updated 5 months ago
- ☆75Updated 2 weeks ago
- Code to compute the XP-CLR statistic to infer natural selection☆90Updated 2 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆231Updated 2 weeks ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆62Updated 6 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆171Updated 3 years ago
- A set of functions to visualise genotypes based on a VCF☆84Updated 2 years ago
- Programs to analyse NGS data for population genetics purposes☆170Updated 2 months ago
- PASA software☆174Updated 11 months ago
- ☆191Updated 3 months ago
- Repository with documentation file of our Jan 22-24 workshop on Computational Population Genetics in Jena, Germany.☆12Updated 5 years ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆112Updated 3 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆174Updated last month
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆140Updated last year
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆241Updated 2 weeks ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆81Updated 2 months ago