DReichLab / AdmixToolsLinks
Tools test whether admixture occurred and more
☆218Updated last year
Alternatives and similar repositories for AdmixTools
Users that are interested in AdmixTools are comparing it to the libraries listed below
Sorting:
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆181Updated last month
- SMC++ infers population history from whole-genome sequence data.☆170Updated last year
- Program for analysing NGS data.☆250Updated 10 months ago
- A library for running k-mers based GWAS☆123Updated last year
- Haplotype based scans for selection☆137Updated this week
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆201Updated last year
- Programs to analyse NGS data for population genetics purposes☆178Updated last year
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆117Updated 4 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- A variational framework for inferring population structure from SNP genotype data.☆144Updated 3 years ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆120Updated 2 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆244Updated 3 weeks ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆183Updated last year
- Documentation archive for GATK tools and workflows☆92Updated 6 years ago
- Eigen tools by Nick Patterson and Alkes Price lab☆196Updated 2 years ago
- Hierarchical Alignment Format☆174Updated last month
- Code to compute the XP-CLR statistic to infer natural selection☆101Updated 3 years ago
- The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.☆220Updated 3 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆93Updated 2 years ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆148Updated 2 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆165Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174Updated 4 years ago
- Estimating Effective Migration Surfaces☆109Updated 2 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆133Updated last year
- Automatically exported from code.google.com/p/jmodeltest2☆81Updated 4 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆216Updated 6 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆178Updated last year
- MITObim - mitochondrial baiting and iterative mapping☆113Updated 5 years ago