DReichLab / AdmixToolsLinks
Tools test whether admixture occurred and more
☆204Updated 9 months ago
Alternatives and similar repositories for AdmixTools
Users that are interested in AdmixTools are comparing it to the libraries listed below
Sorting:
- SMC++ infers population history from whole-genome sequence data.☆168Updated last year
- Program for analysing NGS data.☆237Updated 3 months ago
- Eigen tools by Nick Patterson and Alkes Price lab☆184Updated last year
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆192Updated 10 months ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆312Updated last year
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆174Updated 6 months ago
- Haplotype based scans for selection☆130Updated 2 months ago
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆170Updated 2 years ago
- Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc☆110Updated 3 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆203Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- Recovering genes from targeted sequence capture data☆125Updated 5 months ago
- Scripts for analysis used during the course☆93Updated last year
- Fast genome analysis from unassembled short reads☆292Updated last year
- Extensive de-novo TE Annotator☆390Updated this week
- structural variant calling and genotyping with existing tools, but, smoothly.☆253Updated last year
- General tools for genomic analyses.☆365Updated 4 months ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆136Updated last month
- ☆211Updated 5 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆262Updated last month
- Synteny and Rearrangement Identifier☆390Updated last month
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆154Updated 10 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆188Updated last year
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆271Updated 2 weeks ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆348Updated this week
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆171Updated last week
- ☆82Updated 3 weeks ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆96Updated last month
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆125Updated 7 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago