DReichLab / AdmixTools
Tools test whether admixture occurred and more
☆196Updated 7 months ago
Alternatives and similar repositories for AdmixTools:
Users that are interested in AdmixTools are comparing it to the libraries listed below
- Eigen tools by Nick Patterson and Alkes Price lab☆184Updated last year
- SMC++ infers population history from whole-genome sequence data.☆164Updated last year
- Program for analysing NGS data.☆236Updated last month
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆166Updated 2 years ago
- Haplotype based scans for selection☆126Updated last week
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆189Updated 8 months ago
- Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc☆109Updated 3 years ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆309Updated last year
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆171Updated 4 months ago
- Recovering genes from targeted sequence capture data☆121Updated 3 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆200Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆249Updated 10 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆187Updated last year
- Scripts for analysis used during the course☆90Updated 11 months ago
- A library for running k-mers based GWAS☆108Updated 5 months ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆128Updated this week
- General tools for genomic analyses.☆357Updated last month
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆89Updated 2 weeks ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆249Updated last week
- ☆204Updated 3 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆176Updated 6 months ago
- Low Coverage Calling of Genotypes☆150Updated 2 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 3 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆168Updated last year
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆265Updated 2 months ago
- A variational framework for inferring population structure from SNP genotype data.☆136Updated 2 years ago
- Genome Assembly and Annotation Service code☆211Updated last year
- a bash pipeline for RAD sequencing☆55Updated 2 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆157Updated 2 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆226Updated 4 years ago