Alternatives and similar repositories for ImaGene

Users that are interested in ImaGene are comparing it to the libraries listed below

• lorinanthony / MAPIT
  Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
  ☆15Updated 2 years ago
• Rosemeis / HaploNet
  Haplotype and population structure inference using neural networks.
  ☆27Updated 10 months ago
• jaredgk / PPP
  Repository for pipeline code
  ☆26Updated last year
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆55Updated last year
• healthdisparities / rye
  Large scale ancestry inference from PCA data
  ☆23Updated 2 years ago
• ramachandran-lab / SWIFr
  Sweep Inference Framework (controlling for correlation)
  ☆29Updated last year
• yairf / SDS
  R code to compute the Singleton Density Score (SDS)
  ☆31Updated 9 years ago
• gravelLab / tracts
  A set of tools for modelling ancestry patterns along the genome.
  ☆23Updated last month
• lntran26 / donni
  machine learning applications for dadi
  ☆15Updated 8 months ago
• kr-colab / popvae
  genotype dimensionality reduction with a VAE
  ☆46Updated 7 months ago
• pkalbers / geva
  Genealogical Estimation of Variant Age (GEVA)
  ☆31Updated 4 years ago
• 23andMe / phasedibd
  Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)
  ☆45Updated 2 years ago
• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• standard-aaron / palm
  Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies
  ☆16Updated 4 years ago
• xin-huang / dadi-cli
  Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra
  ☆18Updated 2 months ago
• avaughn271 / CLUES2
  The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.
  ☆15Updated 6 months ago
• enormandeau / snplift
  Transfer coordinates across genomes
  ☆23Updated 4 months ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 4 years ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆64Updated 2 weeks ago
• lh3 / panmask
  Easy genomic regions for short-read variant calling
  ☆44Updated last month
• broadinstitute / str-analysis
  Scripts and utilities related to analyzing short tandem repeats (STRs).
  ☆39Updated 3 weeks ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆51Updated 4 years ago
• stschiff / GAworkshop
  Genome Analysis Workshop (Jena 2016) material
  ☆18Updated 8 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆52Updated 7 months ago
• adhikari-statgen-lab / gwas-power
  R Functions to calculate power of GWAS studies for a single associated SNP, under various parameters. Suitable for classical (i.e. single…
  ☆21Updated 7 years ago
• mcveanlab / treeseq-inference
  Work for the tree sequence inference paper.
  ☆23Updated 4 years ago
• browning-lab / sprime
  The SPrime program identifies variants that are introgressed from archaic populations.
  ☆25Updated 3 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated last month
• msesia / knockoffgwas
  A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.
  ☆15Updated 3 years ago
• alek0991 / iSAFE
  Pinpoints the mutation favored by selection
  ☆34Updated 3 years ago