YaolingYang / SparsePainterLinks
SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap
☆16Updated last month
Alternatives and similar repositories for SparsePainter
Users that are interested in SparsePainter are comparing it to the libraries listed below
Sorting:
- Tools for merging Tandem Repeat VCF files☆33Updated 4 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Updated last month
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 months ago
- Kmer Analysis of Pileups for Genotyping☆32Updated last week
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated 2 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 2 months ago
- ☆31Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆17Updated last year
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Bayesian reconstruction of ancient DNA fragments☆29Updated last year
- Evaluation of phasing performance☆23Updated 7 years ago
- SV genotyper for long reads with a variation graph☆12Updated 3 weeks ago
- Easy genomic regions for short-read variant calling☆36Updated 3 weeks ago
- convert PAF format to CHAIN format☆32Updated 3 months ago
- Haplotype and population structure inference using neural networks.☆27Updated 8 months ago
- ☆37Updated last year
- Reference bias measuring toolkit☆18Updated 4 months ago
- Transfer coordinates across genomes☆23Updated 3 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- TD2☆17Updated 2 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆16Updated last month