YaolingYang / SparsePainterLinks
SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap
☆18Updated 3 months ago
Alternatives and similar repositories for SparsePainter
Users that are interested in SparsePainter are comparing it to the libraries listed below
Sorting:
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Tools for merging Tandem Repeat VCF files☆37Updated 7 months ago
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Updated last month
- Phase reads, assemble haplotypes and detect SVs☆19Updated 5 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆65Updated last month
- Haplotype and population structure inference using neural networks.☆27Updated last year
- Genotyping of copy number sensitive allele-specific haplotypes☆27Updated last month
- Distribution of TEs and their relationship to genes in host genome☆24Updated 2 years ago
- Easy genomic regions for short-read variant calling☆45Updated 3 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Repository for pipeline code☆26Updated last year
- Bayesian reconstruction of ancient DNA fragments☆30Updated last year
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- ☆38Updated 2 months ago
- Kmer Analysis of Pileups for Genotyping☆35Updated 3 weeks ago
- Evaluation of phasing performance☆23Updated 7 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆16Updated 8 months ago
- Invertory of TE-gene isoforms☆13Updated 2 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- R-package: Calculation of haplotype blocks and libraries☆35Updated 5 months ago
- convert PAF format to CHAIN format☆34Updated 7 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 8 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Software for ancestry estimation in unrelated individuals☆22Updated 3 weeks ago