williamslab / admix-simuLinks
Program to simulate admixture between multiple populations
☆19Updated 2 years ago
Alternatives and similar repositories for admix-simu
Users that are interested in admix-simu are comparing it to the libraries listed below
Sorting:
- Genome-wide association studies (GWAS) for ordered categorical phenotypes☆23Updated this week
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Updated 4 months ago
- Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)☆47Updated 2 years ago
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies☆16Updated 5 years ago
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆56Updated 5 months ago
- A set of tools for modelling ancestry patterns along the genome.☆23Updated 3 weeks ago
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆16Updated 3 years ago
- R package for pedigree inference based on SNP data☆28Updated last month
- ☆20Updated 5 years ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆95Updated 3 years ago
- LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut☆36Updated 2 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆66Updated 3 weeks ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆15Updated 2 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆58Updated 7 months ago
- The hap-ibd program detects identity-by-descent segments in phased genotype data.☆53Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Bayesian hierarchical model for complex trait analysis☆46Updated last year
- ☆40Updated 8 years ago
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Updated 6 years ago
- ☆24Updated last year
- RCC workshop, "Analysis of Genetic Data 2: Mapping Genome-wide Associations."☆26Updated 2 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 6 years ago
- Canonical SGE cluster genotype imputation pipeline☆12Updated 10 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- ☆46Updated 10 months ago
- Efficient Local Ancestry Inference☆17Updated 3 months ago
- The SPrime program identifies variants that are introgressed from archaic populations.☆27Updated 3 years ago