Haplotype and population structure inference using neural networks.
☆30Dec 5, 2024Updated last year
Alternatives and similar repositories for HaploNet
Users that are interested in HaploNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- EM-PCA for Ultra-low Coverage Sequencing Data☆20Dec 18, 2025Updated 9 months ago
- Tools for dealing with tree sequences coming to and from SLiM.☆28Sep 26, 2026Updated 2 weeks ago
- Infer the age of ancestral nodes in a tree sequence.☆27Updated this week
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- Software for ancestry estimation in unrelated individuals☆26Jan 31, 2026Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆62Jun 27, 2025Updated last year
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆63Feb 10, 2026Updated 8 months ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆22Apr 9, 2025Updated last year
- Ascertained Sequentially Markovian Coalescent☆19Oct 22, 2025Updated 11 months ago
- ☆18Dec 3, 2024Updated last year
- Maximum a posteriori estimate of contamination for ancient samples☆25Sep 28, 2026Updated last week
- A statistical framework for reference-free inference of archaic local ancestry☆15Nov 8, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 8 years ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 4 years ago
- A Unified Genealogy of Modern and Ancient Humans☆20Dec 10, 2025Updated 10 months ago
- The flare program performs local ancestry inference☆50Nov 4, 2025Updated 11 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 11 months ago
- Tools for identifying introgressed archaic sequence.☆12Jun 20, 2017Updated 9 years ago
- Drawing functions for Demes demographic models☆24Jul 20, 2026Updated 2 months ago
- Sampling and inference of genealogies with recombination☆64Aug 21, 2026Updated last month
- Analysis of inference methods on standard population models☆25Dec 3, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- processes GoT amplicon data and generates a table of metrics☆32Jun 24, 2022Updated 4 years ago
- Composite of Multiple Signals: tests for selection in meiotically recombinant populations☆14Jul 4, 2020Updated 6 years ago
- Infer a tree sequence from genetic variation data.☆65Sep 8, 2026Updated last month
- ☆16Jun 30, 2022Updated 4 years ago
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- Fast, Accurate and Memory-Efficient Principal Component Analysis All in One For Large-scale Dataset☆55Updated this week
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 7 months ago
- Evaluation of phasing performance☆23Mar 6, 2018Updated 8 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- machine learning applications for dadi☆16Jan 23, 2025Updated last year
- A library of standard population genetic models☆145Oct 4, 2026Updated last week
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Sep 18, 2026Updated 3 weeks ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆40May 21, 2024Updated 2 years ago
- Software for estimating genome-wide genealogies for thousands of samples☆47May 19, 2026Updated 4 months ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆31Sep 27, 2019Updated 7 years ago
- TESS3 is a fast and efficient program for estimating spatial population structure based on geographically constrained non-negative matrix…☆24Jun 21, 2023Updated 3 years ago