Haplotype and population structure inference using neural networks.
☆29Dec 5, 2024Updated last year
Alternatives and similar repositories for HaploNet
Users that are interested in HaploNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- EM-PCA for Ultra-low Coverage Sequencing Data☆18Dec 18, 2025Updated 3 months ago
- Software for ancestry estimation in unrelated individuals☆24Jan 31, 2026Updated 2 months ago
- Tools for dealing with tree sequences coming to and from SLiM.☆28Mar 9, 2026Updated last month
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 2 years ago
- Ascertained Sequentially Markovian Coalescent☆16Oct 22, 2025Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Infer the age of ancestral nodes in a tree sequence.☆25Apr 4, 2026Updated last week
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆60Jun 27, 2025Updated 9 months ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 8 months ago
- Fast inference of fine-scale recombination rates based on fused-LASSO☆61Feb 10, 2026Updated 2 months ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆18Apr 9, 2025Updated last year
- Maximum a posteriori estimate of contamination for ancient samples☆23Nov 4, 2025Updated 5 months ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Nov 8, 2019Updated 6 years ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- The flare program performs local ancestry inference☆46Nov 4, 2025Updated 5 months ago
- A Unified Genealogy of Modern and Ancient Humans☆20Dec 10, 2025Updated 4 months ago
- Tools for identifying introgressed archaic sequence.☆12Jun 20, 2017Updated 8 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 5 months ago
- Analysis of inference methods on standard population models☆25Dec 3, 2021Updated 4 years ago
- Drawing functions for Demes demographic models☆25Mar 30, 2026Updated last week
- ☆16Jun 30, 2022Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆32Jun 24, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Infer a tree sequence from genetic variation data.☆63Apr 1, 2026Updated last week
- Fast, Accurate and Memory-Efficient Principal Component Analysis For Tera-scale Dataset☆51Updated this week
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated last month
- Evaluation of phasing performance☆23Mar 6, 2018Updated 8 years ago
- Rapid and accurate ancestry inference using SNVs.☆28Aug 15, 2025Updated 7 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- Software for estimating genome-wide genealogies for thousands of samples☆42Oct 17, 2025Updated 5 months ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆30Sep 27, 2019Updated 6 years ago
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Jul 19, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Work for the tree sequence inference paper.☆23Oct 19, 2020Updated 5 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆32Jun 12, 2025Updated 9 months ago
- A library of standard population genetic models☆140Mar 23, 2026Updated 2 weeks ago
- Composite of Multiple Signals: tests for selection in meiotically recombinant populations☆14Jul 4, 2020Updated 5 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Nov 19, 2025Updated 4 months ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated last year
- Detect recombination hotspots using population genetic data.☆17Jun 10, 2020Updated 5 years ago