A software package for local ancestry inference and haplotype phasing
☆46Apr 20, 2023Updated 3 years ago
Alternatives and similar repositories for Loter
Users that are interested in Loter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 11 months ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 3 years ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆101Dec 12, 2022Updated 3 years ago
- Topology weighting by iterative sampling of sub-trees☆89Jan 5, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- General tools for genomic analyses.☆400Mar 25, 2026Updated 7 months ago
- The SPrime program identifies variants that are introgressed from archaic populations.☆32May 21, 2022Updated 4 years ago
- findGSEP package☆10Jul 27, 2024Updated 2 years ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 5 years ago
- The flare program performs local ancestry inference☆50Nov 4, 2025Updated last year
- Tools test whether admixture occurred and more☆237Jul 13, 2026Updated 3 months ago
- Calculate Hybrid Index and Heterozygosity from SNP data☆17Sep 2, 2025Updated last year
- Fast analysis and visualization of latent clusters in population genetic data☆77Mar 29, 2022Updated 4 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An R Package to build and simulate coalescent models☆22Sep 27, 2026Updated last month
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆193Dec 19, 2024Updated last year
- Selection outlier scan with population branch statistic☆14Feb 21, 2024Updated 2 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- Software package for estimating fine-scale recombination rate.☆20Jun 8, 2021Updated 5 years ago
- A fast, scalable, and accurate local ancestry method.☆127Sep 3, 2026Updated 2 months ago
- Population genetic summary statistics☆40Sep 28, 2023Updated 3 years ago
- ☆49Oct 17, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Haplotype based scans for selection☆151Jun 5, 2026Updated 5 months ago
- Topology weighting from unphased genotypes of any ploidy☆30Aug 13, 2026Updated 2 months ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆76Mar 27, 2026Updated 7 months ago
- Genetic Algorithm for Demographic Model Analysis☆60Feb 3, 2026Updated 9 months ago
- Tutorials on phylogenetic and phylogenomic inference☆53May 4, 2025Updated last year
- A toolkit for identifying recombination and recombinant genotypes☆26Dec 3, 2025Updated 11 months ago
- Hybridization detection using phylogenetic invariants☆54Oct 29, 2024Updated 2 years ago
- The hap-ibd program detects identity-by-descent segments in phased genotype data.☆58Jun 11, 2024Updated 2 years ago
- Genealogical Estimation of Variant Age (GEVA)☆34Sep 30, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- Recomb-Mix: a local ancestry inference tool☆18Oct 28, 2026Updated last week
- Quantifying Introgression via Branch Lengths☆59Sep 30, 2022Updated 4 years ago
- ☆29Mar 13, 2026Updated 7 months ago
- ☆34Jan 5, 2023Updated 3 years ago
- BITE: BioInformatics tools for everyone☆22Jul 25, 2024Updated 2 years ago
- R package to explore active transposable elements with RNA-seq data☆20Nov 25, 2022Updated 3 years ago