bcm-uga / LoterView external linksLinks
A software package for local ancestry inference and haplotype phasing
☆45Apr 20, 2023Updated 2 years ago
Alternatives and similar repositories for Loter
Users that are interested in Loter are comparing it to the libraries listed below
Sorting:
- Efficient Local Ancestry Inference☆17Nov 10, 2025Updated 3 months ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆19Sep 25, 2023Updated 2 years ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆95Dec 12, 2022Updated 3 years ago
- ☆47Oct 17, 2025Updated 3 months ago
- A toolkit for identifying recombination and recombinant genotypes☆26Dec 3, 2025Updated 2 months ago
- The hap-ibd program detects identity-by-descent segments in phased genotype data.☆53Jun 11, 2024Updated last year
- General tools for genomic analyses.☆386Feb 28, 2025Updated 11 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆183Dec 19, 2024Updated last year
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated last year
- SMC++ infers population history from whole-genome sequence data.☆172Jan 20, 2024Updated 2 years ago
- R package to explore active transposable elements with RNA-seq data☆21Nov 25, 2022Updated 3 years ago
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year
- Topology weighting by iterative sampling of sub-trees☆84Jan 5, 2025Updated last year
- Algorithm for rapid, phase-free detection of long identical by descent segments☆23Mar 31, 2024Updated last year
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 4 years ago
- ☆13Apr 30, 2019Updated 6 years ago
- iLASH - IBD Estimation Using Locality Sensitive Hashing☆17Nov 6, 2025Updated 3 months ago
- ☆32Jan 5, 2023Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- The flare program performs local ancestry inference☆46Nov 4, 2025Updated 3 months ago
- Phased structural variant discovery in pangenomes☆39Dec 9, 2025Updated 2 months ago
- ☆12Jun 12, 2023Updated 2 years ago
- ☆13Jan 16, 2026Updated 3 weeks ago
- Selection outlier scan with population branch statistic☆15Feb 21, 2024Updated last year
- A developed pipeline for expressed endogenous retrovirus identification.☆16Oct 9, 2024Updated last year
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆77Dec 3, 2025Updated 2 months ago
- Likelihood-based Selective Sweep Detection☆40Oct 12, 2023Updated 2 years ago
- Quantifying Introgression via Branch Lengths☆56Sep 30, 2022Updated 3 years ago
- The SPrime program identifies variants that are introgressed from archaic populations.☆27May 21, 2022Updated 3 years ago
- A fast, scalable, and accurate local ancestry method.☆108Updated this week
- Code to compute the XP-CLR statistic to infer natural selection☆102Jun 13, 2022Updated 3 years ago
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆15Sep 5, 2024Updated last year
- Assessing confidence in introgression among four populations☆28Apr 19, 2021Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Jun 12, 2025Updated 8 months ago
- Population genetic summary statistics☆40Sep 28, 2023Updated 2 years ago
- Here we present a method to plot the outputs of RFMIX version 2☆31Aug 14, 2024Updated last year
- Tools test whether admixture occurred and more☆219Sep 6, 2024Updated last year
- ☆78Dec 4, 2019Updated 6 years ago