alisi1989 / RFMIX2-Pipeline-to-plotLinks
Here we present a method to plot the outputs of RFMIX version 2
☆26Updated 11 months ago
Alternatives and similar repositories for RFMIX2-Pipeline-to-plot
Users that are interested in RFMIX2-Pipeline-to-plot are comparing it to the libraries listed below
Sorting:
- Variant annotation and merging pipeline☆36Updated last month
- Haplotype and population structure inference using neural networks.☆27Updated 7 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 8 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Structural variant merging tool☆52Updated 10 months ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated last month
- tutorial on pggb☆35Updated 6 months ago
- ☆24Updated last year
- ☆31Updated 10 months ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆28Updated 4 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 4 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 2 months ago
- Error correction of ONT transcript reads☆58Updated last year
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 6 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- ☆29Updated 2 months ago
- MEGAnE☆31Updated last year
- Genealogical Estimation of Variant Age (GEVA)☆29Updated 3 years ago
- A software package for local ancestry inference and haplotype phasing☆40Updated 2 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆36Updated last year
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year