alisi1989 / RFMIX2-Pipeline-to-plotLinks
Here we present a method to plot the outputs of RFMIX version 2
☆30Updated last year
Alternatives and similar repositories for RFMIX2-Pipeline-to-plot
Users that are interested in RFMIX2-Pipeline-to-plot are comparing it to the libraries listed below
Sorting:
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 6 months ago
- Structural variant merging tool☆57Updated last year
- MEGAnE☆33Updated 2 years ago
- Variant annotation and merging pipeline☆41Updated 5 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Haplotype and population structure inference using neural networks.☆27Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆34Updated last year
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- A bioinformatics pipeline to phase and impute genetic data☆27Updated last month
- ☆31Updated 3 months ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Improving gene isoform quantification with miniQuant☆31Updated last week
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆31Updated 3 months ago
- Efficient merging of structural variants from multiple SV callers and samples☆31Updated last month
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 10 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆83Updated 10 months ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- tutorial on pggb☆36Updated last year
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆47Updated last year
- Repository for code to produce phased 1000 Genomes Project haplotypes called against the CHM13v2 T2T reference genome.☆15Updated last week
- Long-read splice alignment with high accuracy☆64Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 2 months ago
- python plotly Circos from VCF☆40Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago