Rosemeis / pcangsdLinks
Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
☆51Updated 2 weeks ago
Alternatives and similar repositories for pcangsd
Users that are interested in pcangsd are comparing it to the libraries listed below
Sorting:
- Software for ancestry estimation in unrelated individuals☆20Updated 3 weeks ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- predicting DFE and alpha from polymorphism data☆28Updated 6 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Sampling and inference of genealogies with recombination☆29Updated 8 months ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated 2 weeks ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- ☆29Updated 2 years ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 8 months ago
- Infer demographic history with the Moran model☆47Updated 3 months ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 6 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- Tools to convert to and from vcf format☆14Updated 7 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆20Updated 5 years ago
- ☆23Updated last year
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last month
- GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples …☆26Updated last week
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆12Updated last month
- Tutorial about R package PopGenome☆41Updated 6 years ago
- GONE: Scripts, programs and an example data set☆47Updated last year
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 4 months ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 8 months ago
- ☆24Updated 7 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago