Rosemeis / pcangsdLinks
Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
☆56Updated 6 months ago
Alternatives and similar repositories for pcangsd
Users that are interested in pcangsd are comparing it to the libraries listed below
Sorting:
- Infer demographic history with the Moran model☆50Updated 6 months ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Tools and Utilities for msmc and msmc2☆49Updated 4 months ago
- predicting DFE and alpha from polymorphism data☆28Updated 7 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆43Updated 6 years ago
- ☆32Updated 2 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- ☆24Updated 8 years ago
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆25Updated 2 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Updated 7 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- finshingTool☆54Updated 9 years ago
- Sampling and inference of genealogies with recombination☆47Updated 6 months ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- ☆26Updated 10 months ago
- Utilities for analyzing next generation sequencing data☆17Updated 7 years ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆53Updated 6 months ago
- Tools to convert to and from vcf format☆14Updated 8 years ago
- Software for ancestry estimation in unrelated individuals☆22Updated 3 weeks ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago