Alternatives and similar repositories for eems:

Users that are interested in eems are comparing it to the libraries listed below

• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆148Updated last year
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆58Updated 5 months ago
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆64Updated 2 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆25Updated 9 months ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 2 months ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆57Updated this week
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆78Updated 8 months ago
• pgugger / LandscapeGenomics
  Tutorials for bioinformatics and data analysis related to landscape genomics
  ☆27Updated 6 years ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated last year
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆85Updated 3 years ago
• Capblancq / RDA-landscape-genomics
  ☆31Updated 3 years ago
• szpiech / selscan
  Haplotype based scans for selection
  ☆123Updated this week
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆65Updated 11 months ago
• kr-colab / diploSHIC
  feature-based deep learning for the identification of selective sweeps
  ☆54Updated last month
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆76Updated 3 months ago
• uqrmaie1 / admixtools
  ☆79Updated last week
• BenjaminPeter / rangeexpansion
  ☆13Updated 7 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆45Updated 6 months ago
• dentearl / structureHarvester
  Structure Harvester is a program for parsing the output of Pritchard's STRUCTURE and for performing the Evanno method.
  ☆29Updated 2 years ago
• grunwaldlab / Population_Genetics_in_R
  A primer for computational tools to analyze genetics of populations in R
  ☆86Updated 4 years ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆108Updated 5 months ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆28Updated last week
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• speciationgenomics / presentations
  Presentations from the course
  ☆36Updated last year
• nt246 / lcwgs-guide-tutorial
  ☆84Updated 3 years ago
• LarsNauheimer / HybPhaser
  Workflow to detect and phase hybrids in target capture data
  ☆18Updated 2 years ago
• jade-cheng / ohana
  mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.
  ☆85Updated 3 years ago
• bakeronit / acropora_digitifera_wgs
  ☆12Updated last year