Alternatives and similar repositories for eems

Users that are interested in eems are comparing it to the libraries listed below

• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 9 months ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆85Updated last year
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆66Updated 2 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆26Updated 2 months ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆59Updated last week
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆67Updated last week
• uqrmaie1 / admixtools
  ☆85Updated 4 months ago
• pgugger / LandscapeGenomics
  Tutorials for bioinformatics and data analysis related to landscape genomics
  ☆29Updated 6 years ago
• Capblancq / RDA-landscape-genomics
  ☆30Updated 3 years ago
• jade-cheng / ohana
  mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.
  ☆87Updated 4 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• szpiech / selscan
  Haplotype based scans for selection
  ☆134Updated last week
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆116Updated last year
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆149Updated 2 years ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆23Updated 2 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆34Updated 4 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• BenjaminPeter / rangeexpansion
  ☆13Updated 8 years ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• ekirving / qpbrute
  Heuristic search algorithm for fitting qpGraph models
  ☆10Updated 3 years ago
• Yale-EEB723 / syllabus
  ☆22Updated 6 years ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆31Updated 2 weeks ago
• dereneaton / ipyrad
  Interactive assembly and analysis of RAD-seq data sets
  ☆78Updated last week
• popgenmethods / smcpp
  SMC++ infers population history from whole-genome sequence data.
  ☆167Updated last year
• auton1 / LDhat
  Estimate recombination rates from population genetic data
  ☆68Updated 5 years ago
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆128Updated 4 months ago
• andrewkern / popGenMachineLearningExamples
  simple examples of using supervised machine learning for population genetics inference
  ☆39Updated 8 years ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆44Updated 6 years ago
• speciationgenomics / presentations
  Presentations from the course
  ☆38Updated 2 years ago