Scripts for implementing the Tractor pipeline
☆58Jul 29, 2026Updated 3 months ago
Alternatives and similar repositories for Tractor
Users that are interested in Tractor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a referen…☆12Jun 10, 2019Updated 7 years ago
- A tutorial for running Tractor and Tractor-Mix on toy datasets, including step-by-step instructions for preparing data, estimating PCs an…☆12Dec 22, 2025Updated 10 months ago
- Program to simulate admixture between multiple populations☆19Mar 8, 2023Updated 3 years ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆101Dec 12, 2022Updated 3 years ago
- Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc☆119Sep 13, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆199May 2, 2022Updated 4 years ago
- A fast, scalable, and accurate local ancestry method.☆126Sep 3, 2026Updated last month
- ☆15Nov 22, 2022Updated 3 years ago
- Here we present a method to plot the outputs of RFMIX version 2☆32Jul 1, 2026Updated 3 months ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆22Mar 31, 2026Updated 6 months ago
- CoMorMent-Containers☆40Jun 8, 2026Updated 4 months ago
- Adding random effects model to the METAL software☆15Jun 11, 2023Updated 3 years ago
- An R package for creating ggplot2 based miami plots.☆20Mar 7, 2025Updated last year
- ☆12Jun 17, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- An R package for creating mirrored Manhattan plots☆19Sep 30, 2022Updated 4 years ago
- A set of tools for modelling ancestry patterns along the genome.☆24Oct 20, 2026Updated last week
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆47Apr 28, 2026Updated 6 months ago
- ☆12Oct 14, 2022Updated 4 years ago
- Stratified squared trans-ethnic genetic correlation☆14May 12, 2022Updated 4 years ago
- ☆20Aug 7, 2025Updated last year
- PCA for hidden variable inference in QTL mapping: an R package and tutorial☆24Jan 25, 2023Updated 3 years ago
- The flare program performs local ancestry inference☆50Nov 4, 2025Updated 11 months ago
- xSqueezeIt VCF/BCF Genotype data compressor with extensible compute friendly format☆14Aug 5, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Cross-population polygenic prediction☆114Oct 9, 2026Updated 3 weeks ago
- ☆15Dec 7, 2020Updated 5 years ago
- ☆25Jun 30, 2023Updated 3 years ago
- ☆14Jun 15, 2022Updated 4 years ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 4 years ago
- Mediated Expression Score Regression (MESC)☆30Nov 4, 2025Updated 11 months ago
- Main ricopili repo for public releases☆54Apr 8, 2025Updated last year
- regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.☆271Oct 2, 2026Updated 3 weeks ago
- Evaluating potential drug targets through human loss-of-function genetic variation☆12May 27, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆15Apr 24, 2026Updated 6 months ago
- Toolkit for analyzing genetics data from admixed populations☆32Oct 18, 2026Updated last week
- ☆23Aug 28, 2026Updated 2 months ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆143Dec 9, 2024Updated last year
- Fast and Efficient Tool to Simulate Summary Statistics from Genome-Wide Association Studies☆12May 21, 2024Updated 2 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆19Jan 10, 2024Updated 2 years ago
- Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)☆26Feb 1, 2020Updated 6 years ago