Atkinson-Lab / TractorLinks
Scripts for implementing the Tractor pipeline
☆50Updated 4 months ago
Alternatives and similar repositories for Tractor
Users that are interested in Tractor are comparing it to the libraries listed below
Sorting:
- Sequence kernel association test (SKAT)☆50Updated 5 months ago
- Main ricopili repo for public releases☆48Updated 3 months ago
- R package to perform Bayesian Genome-Wide Association Studies☆40Updated last year
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆52Updated 6 years ago
- ☆40Updated 7 years ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆45Updated 4 months ago
- Manhattan++☆28Updated last year
- An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.☆39Updated 7 months ago
- R package for quality control of plink genetic datasets☆59Updated last week
- An R package for performing STAAR procedure in whole-genome sequencing studies☆93Updated 5 months ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆88Updated 2 years ago
- Development for SAIGE and SAIGE-GENE(+)☆77Updated this week
- FOCUS: Fine-mapping Of CaUsal gene Sets☆45Updated last year
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆66Updated 9 months ago
- ☆30Updated 3 years ago
- ☆60Updated 3 years ago
- methods for functional summary-based imputation☆85Updated 3 years ago
- Statistical tools for Quantitative Genetic Analyses☆37Updated last month
- Enhanced version of the FastQTL QTL mapper☆67Updated 2 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆49Updated 3 weeks ago
- Make LocusZoom-like plots with your own LD matrix.☆43Updated 2 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆32Updated last month
- Colocalization analysis of genetic association signals☆52Updated last month
- ☆33Updated 2 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- Generalized linear Mixed Model Association Tests☆42Updated last year
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated last year
- Every Gene Ever Annotated in published GWAS☆48Updated 2 years ago