Efficient Local Ancestry Inference
☆17Nov 10, 2025Updated 11 months ago
Alternatives and similar repositories for ELAI
Users that are interested in ELAI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- A software package for local ancestry inference and haplotype phasing☆46Apr 20, 2023Updated 3 years ago
- Calculates the probability of a haplotype given a population reference panel☆12Dec 9, 2024Updated last year
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 7 months ago
- The hap-ibd program detects identity-by-descent segments in phased genotype data.☆58Jun 11, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- RFMIX - Local Ancestry and Admixture Inference Version 2☆101Dec 12, 2022Updated 3 years ago
- ☆28Mar 13, 2026Updated 7 months ago
- The flare program performs local ancestry inference☆50Nov 4, 2025Updated 11 months ago
- Recomb-Mix: a local ancestry inference tool☆18Updated this week
- Here, we de novo assembled 110 representative Setaria accessions from a worldwide collected 1,844 variteies, and performed pan-/graph- ge…☆30Sep 13, 2023Updated 3 years ago
- Integrate multiple genome assemblies into a pangenome graph☆37Jun 9, 2022Updated 4 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated 2 years ago
- R package for analysis of hybrids and hybrid zones☆22Sep 23, 2026Updated last month
- the miscellaneous analysis scripts used in the research of pan-Zea genome and genetics☆17Aug 25, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Run and Analyse SLiM Population Genetics Forward Simulations from R.☆10Nov 26, 2025Updated 11 months ago
- A toolkit for identifying recombination and recombinant genotypes☆26Dec 3, 2025Updated 10 months ago
- Tutorials on phylogenetic and phylogenomic inference☆53May 4, 2025Updated last year
- LDna: an R package to perform linkage disequilibrium network analysis☆31Apr 12, 2024Updated 2 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 3 years ago
- Documentation for the Helium pedigree visualization software☆17Apr 3, 2024Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Continuous mapping of genetic diversity☆17Apr 28, 2026Updated 6 months ago
- association analysis of distance matrices using gradient forest approach☆16Oct 4, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R-package: Calculation of haplotype blocks and libraries☆36Jul 22, 2025Updated last year
- Canonical SGE cluster genotype imputation pipeline☆11Jan 18, 2016Updated 10 years ago
- Sampling and inference of genealogies with recombination☆68Aug 21, 2026Updated 2 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- Hybridization detection using phylogenetic invariants☆54Oct 29, 2024Updated 2 years ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Oct 12, 2024Updated 2 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆14May 1, 2019Updated 7 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆37Jun 12, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- TQSLE v1.0 released☆10Aug 29, 2023Updated 3 years ago
- Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions☆35Nov 14, 2024Updated last year
- Calculate Hybrid Index and Heterozygosity from SNP data☆17Sep 2, 2025Updated last year
- Joint inference of heterozygosity rates and runs of homozygosity☆26Updated this week
- Here we present a method to plot the outputs of RFMIX version 2☆32Jul 1, 2026Updated 3 months ago
- Algorithm for rapid, phase-free detection of long identical by descent segments☆25Sep 24, 2026Updated last month
- A haplotype analysis toolkit for natural variation study.☆36Oct 3, 2023Updated 3 years ago