AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestries to segments of chromosomes the decribe the path back through a population history that segment has taken.
☆11Jun 29, 2023Updated 2 years ago
Alternatives and similar repositories for AncestralPaths
Users that are interested in AncestralPaths are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Dec 3, 2024Updated last year
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 10 months ago
- The flare program performs local ancestry inference☆46Nov 4, 2025Updated 5 months ago
- Joint inference of heterozygosity rates and runs of homozygosity☆19Dec 12, 2025Updated 4 months ago
- ☆13May 13, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Workflow for processing Illumina sequencing runs for ancient human DNA☆26Oct 29, 2020Updated 5 years ago
- ☆14Mar 7, 2021Updated 5 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆19Apr 9, 2025Updated last year
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 6 years ago
- Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data☆26Jul 8, 2022Updated 3 years ago
- Software for ancestry estimation in unrelated individuals☆24Jan 31, 2026Updated 3 months ago
- ☆51Apr 1, 2026Updated last month
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- ☆15Jan 16, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Faster multispecies coalescent inference using multilocus data☆15Aug 13, 2023Updated 2 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆32Mar 24, 2026Updated last month
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆15Sep 2, 2021Updated 4 years ago
- Genome Analysis Workshop (Jena 2016) material☆18Mar 3, 2017Updated 9 years ago
- ☆15Jul 17, 2019Updated 6 years ago
- Rust bindings for the tskit library☆18Updated this week
- Time-stratified f-statistics☆16Aug 1, 2025Updated 9 months ago
- Method for dating admixture in ancient DNA specimens☆31Jan 12, 2022Updated 4 years ago
- A course with Jupyter Notebooks for Computational Population Genetics☆10Sep 4, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 1-code framework: docs, C-library, and tools☆26Apr 2, 2026Updated 3 weeks ago
- TESS3 is a fast and efficient program for estimating spatial population structure based on geographically constrained non-negative matrix…☆22Jun 21, 2023Updated 2 years ago
- Low Coverage Calling of Genotypes☆168Apr 24, 2026Updated last week
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆16Jul 7, 2022Updated 3 years ago
- Several DNA sequencing algorithms coded in Python: Boyer-Moore, Pigeon Hole, k-mer, Naive, Approximate Matching☆13Oct 19, 2015Updated 10 years ago
- Löve 2D (lua) Game Development Starter Bundle☆20Jul 24, 2016Updated 9 years ago
- Unsorted scripts for bioinformatics☆64Jul 1, 2021Updated 4 years ago
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Oct 2, 2019Updated 6 years ago
- A merged read deduplication tool capable to perform merged read deduplication on single end data.☆13Sep 4, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Efficient, parallel compression for terabyte-scale data☆62Feb 25, 2026Updated 2 months ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Nov 8, 2019Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Sep 11, 2025Updated 7 months ago
- 3D visualizations and editing in Julia + OpenGL☆19Feb 8, 2020Updated 6 years ago
- Tools for describing and manipulating demographic models.☆19Mar 30, 2026Updated last month
- General purpose population genetics software☆17Jul 15, 2019Updated 6 years ago
- Here we present a method to plot the outputs of RFMIX version 2☆31Aug 14, 2024Updated last year