BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data
☆124Aug 24, 2023Updated 2 years ago
Alternatives and similar repositories for BIGSI
Users that are interested in BIGSI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De novo genome assembly and multisample variant calling☆112Mar 28, 2019Updated 7 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆224Oct 23, 2025Updated 7 months ago
- Antimicrobial Resistance Identification By Assembly☆187Oct 12, 2023Updated 2 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆66May 11, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Library of sketching functions used by PopPUNK☆31Mar 31, 2025Updated last year
- A genomic minhashing implementation in Rust☆103Jun 17, 2025Updated 11 months ago
- A fast approximate aligner for long DNA sequences☆288Oct 11, 2024Updated last year
- a collection of scripts for organising bacterial genomes by species☆81Mar 18, 2022Updated 4 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆108Mar 2, 2026Updated 2 months ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- Histosketching Using Little Kmers☆57May 25, 2023Updated 3 years ago
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 2 years ago
- Pan-genome inference and genotyping with long noisy or short accurate reads☆118Dec 13, 2024Updated last year
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆86Mar 7, 2024Updated 2 years ago
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆74Apr 1, 2026Updated last month
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Apr 9, 2024Updated 2 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Mar 7, 2019Updated 7 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆302Apr 25, 2025Updated last year
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆100May 14, 2026Updated last week
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 4 years ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆248Jan 18, 2024Updated 2 years ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆542Updated this week
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 7 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆107Feb 6, 2025Updated last year
- sensitive and precise assembly of short sequencing reads☆167Oct 11, 2024Updated last year
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆88Jan 25, 2024Updated 2 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆133Feb 26, 2024Updated 2 years ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- SKESA assembler☆126Oct 11, 2024Updated last year
- A tool for Racon polishing of miniasm assemblies☆81Mar 2, 2026Updated 2 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆156Oct 2, 2025Updated 7 months ago
- hybrid assembly pipeline for bacterial genomes☆641Jul 25, 2024Updated last year
- Gene cluster comparison figure generator☆641Dec 22, 2025Updated 5 months ago