Phelimb / BIGSI
BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data
☆124Updated last year
Related projects ⓘ
Alternatives and complementary repositories for BIGSI
- ONT assembly and Illumina polishing pipeline☆91Updated 3 years ago
- Long-read mock community experiments☆103Updated 3 years ago
- De novo genome assembly and multisample variant calling☆113Updated 5 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆77Updated 3 years ago
- SURPI☆82Updated 8 years ago
- "Reads to report" for public health and clinical microbiology☆136Updated 8 months ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆53Updated 9 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- A tool for Racon polishing of miniasm assemblies☆73Updated 3 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆37Updated last year
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆58Updated 5 years ago
- SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension☆46Updated 3 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆83Updated last month
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 5 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆46Updated 3 years ago
- A fork of exonerate: a generic tool for sequence alignment☆62Updated 11 months ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- ☆76Updated 4 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated 11 months ago
- Research release basecalling models and configurations☆103Updated 5 months ago
- Whole Genome Simulator for Next-Generation Sequencing☆93Updated last year
- De novo assembly from Oxford Nanopore reads.☆74Updated last week
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- ☆79Updated last year
- Interactive visualization of assembly graphs☆80Updated 2 years ago
- Foreign Contamination Screening caller scripts and documentation☆106Updated this week
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆93Updated last month