dnbaker / dashingLinks
Fast and accurate genomic distances using HyperLogLog
☆162Updated 2 years ago
Alternatives and similar repositories for dashing
Users that are interested in dashing are comparing it to the libraries listed below
Sorting:
- Genome inference from a population reference graph☆96Updated 8 months ago
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆96Updated 6 months ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆66Updated 5 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆131Updated 2 years ago
- Yet Another Chimeric Read Detector☆81Updated last year
- An efficient index for the colored, compacted, de Bruijn graph☆110Updated last year
- A fast K-mer counter for high-fidelity shotgun datasets☆135Updated 3 months ago
- compacted de Bruijn graph construction in low memory☆100Updated last month
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆99Updated 7 months ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Updated last year
- Pan-genome inference and genotyping with long noisy or short accurate reads☆119Updated last year
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆103Updated 3 weeks ago
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆113Updated 2 years ago
- Aligns short reads using dynamic seed size with strobemers☆185Updated this week
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆152Updated this week
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆161Updated 3 weeks ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- Long-read mock community experiments☆104Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆78Updated 3 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities☆98Updated 3 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 3 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated 5 months ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆134Updated last month
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- An accurate and ultra-fast hybrid genome assembler☆86Updated last year
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆68Updated 4 years ago
- alignment to variation graph inducer☆152Updated this week
- Create a tree using Mash distances☆177Updated 2 years ago