dnbaker / dashingLinks
Fast and accurate genomic distances using HyperLogLog
☆163Updated 3 years ago
Alternatives and similar repositories for dashing
Users that are interested in dashing are comparing it to the libraries listed below
Sorting:
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆66Updated 5 years ago
- MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities☆98Updated 3 years ago
- A tool for Racon polishing of miniasm assemblies☆78Updated 4 months ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆96Updated 8 months ago
- Genome inference from a population reference graph☆96Updated 9 months ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- An accurate and ultra-fast hybrid genome assembler☆87Updated last year
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Updated last year
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆99Updated 3 weeks ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆132Updated 2 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 3 years ago
- compacted de Bruijn graph construction in low memory☆100Updated 2 months ago
- Chromosome-level scaffolding using multiple references☆164Updated last year
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆67Updated 4 years ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆103Updated 3 weeks ago
- de novo virus assembler of Illumina paired reads☆58Updated 4 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Updated 9 months ago
- A fast K-mer counter for high-fidelity shotgun datasets☆140Updated last week
- SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension☆47Updated 5 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆111Updated last year
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Updated 2 months ago
- ONT assembly and Illumina polishing pipeline☆88Updated 5 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆148Updated 3 months ago
- A repository for generating strobemers and evalaution☆79Updated last year
- Long-read mock community experiments☆104Updated 4 years ago
- Best-fit model selection☆87Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphs☆107Updated last week
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆154Updated this week