Fast and accurate genomic distances using HyperLogLog
☆162Jan 19, 2023Updated 3 years ago
Alternatives and similar repositories for dashing
Users that are interested in dashing are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆77Jun 17, 2024Updated 2 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 3 years ago
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Mar 25, 2025Updated last year
- A fast approximate aligner for long DNA sequences☆289Oct 11, 2024Updated last year
- ☆20Aug 18, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Mar 8, 2022Updated 4 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆112Jun 19, 2026Updated 2 months ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Apr 9, 2024Updated 2 years ago
- C++ Implementations of sketch data structures with SIMD Parallelism, including Python bindings☆156Jul 23, 2024Updated 2 years ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆555Updated this week
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆75Apr 1, 2026Updated 4 months ago
- Fast genome and metagenome distance estimation using MinHash☆451Sep 19, 2025Updated 11 months ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Feb 23, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- The Modular Aligner and The Modular SV Caller☆47Jul 18, 2023Updated 3 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆145Aug 24, 2025Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- Global alignment and alignment extension☆143Jun 27, 2023Updated 3 years ago
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.☆40Jul 15, 2019Updated 7 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- De novo genome assembly and multisample variant calling☆113Mar 28, 2019Updated 7 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 8 years ago
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 5 years ago
- Pan-genome inference and genotyping with long noisy or short accurate reads☆119Dec 13, 2024Updated last year
- ☆290Dec 29, 2025Updated 8 months ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆88Mar 7, 2024Updated 2 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆55Aug 22, 2026Updated last week
- A tool for Racon polishing of miniasm assemblies☆83Jul 24, 2026Updated last month
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data☆298Sep 6, 2025Updated 11 months ago