dnbaker / dashing
Fast and accurate genomic distances using HyperLogLog
☆160Updated last year
Related projects ⓘ
Alternatives and complementary repositories for dashing
- MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities☆96Updated 2 years ago
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆117Updated 8 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆141Updated 2 years ago
- De novo genome assembly and multisample variant calling☆113Updated 5 years ago
- VGP repository for the genome assembly working group☆188Updated last year
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆181Updated last year
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆224Updated 10 months ago
- A fast K-mer counter for high-fidelity shotgun datasets☆117Updated 3 weeks ago
- Genome inference from a population reference graph☆93Updated 2 years ago
- Long read / genome alignment software☆258Updated 2 weeks ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆92Updated 2 weeks ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆66Updated 4 years ago
- Comparison of multiple long read datasets☆108Updated 2 weeks ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆214Updated 3 months ago
- A fast approximate aligner for long DNA sequences☆269Updated last month
- Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redunda…☆146Updated 10 months ago
- SEER, reimplemented in python 🐍🔮☆111Updated last month
- NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads☆106Updated last year
- A tool for Racon polishing of miniasm assemblies☆73Updated 3 years ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆118Updated 3 weeks ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆83Updated 6 years ago
- SKESA assembler☆112Updated last month
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆241Updated 2 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆148Updated 11 months ago
- Aligns short reads using dynamic seed size with strobemers☆150Updated this week
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆130Updated 11 months ago
- DAS Tool☆140Updated 6 months ago
- Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs☆206Updated 7 months ago
- Antibiotic resistance prediction in minutes☆106Updated 6 months ago
- Best-fit model selection☆77Updated 8 months ago