bdsc-tds / SPLITLinks
Profile purification of single-cell spatial transcriptomics data
☆17Updated this week
Alternatives and similar repositories for SPLIT
Users that are interested in SPLIT are comparing it to the libraries listed below
Sorting:
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- ☆16Updated 9 months ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆32Updated 3 months ago
- A database of useful gene signatures for single-cell analysis☆25Updated 3 months ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆20Updated 2 months ago
- ☆88Updated last month
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- R package for normalisation of spatial transcriptomics data☆12Updated 2 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆36Updated 2 months ago
- Single-cell analysis with non-negative matrix factorization☆45Updated last month
- ☆25Updated 3 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 3 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆34Updated 3 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Implementation of MaSigPro for scRNA-Seq Data☆14Updated last year
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated 2 months ago
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆44Updated 2 weeks ago
- R package for Bioconductor submission☆37Updated 2 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆30Updated 3 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Cell type pipes for R☆51Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆17Updated 8 months ago
- Hierarchical Cell Annotation☆24Updated 9 months ago