BANKSY: spatial clustering
☆162May 30, 2026Updated 3 months ago
Alternatives and similar repositories for Banksy
Users that are interested in Banksy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆97Jul 4, 2026Updated 2 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆486Jan 22, 2026Updated 8 months ago
- Spatial omics analysis toolbox☆388Updated this week
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆293Sep 15, 2026Updated last week
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆152Feb 20, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆197Aug 31, 2026Updated 3 weeks ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆191Updated this week
- A Toolbox for Spatial Transcriptomics Analysis☆172May 6, 2025Updated last year
- Convert Seurat objects to 10x Genomics Loupe files.☆161Apr 24, 2026Updated 4 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆184Jan 8, 2026Updated 8 months ago
- ☆24Jan 10, 2025Updated last year
- Join subcellular Visium HD bins into cells☆143Sep 14, 2026Updated last week
- Spatially-aware quality control for spatial transcriptomics☆17Sep 8, 2026Updated 2 weeks ago
- Methods for detecting doublets in single-cell sequencing data☆268Aug 31, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Cell-type Relationship Analysis Workflow Done Across Distances☆42Nov 18, 2025Updated 10 months ago
- From geospatial to spatial -omics☆104Jul 24, 2026Updated last month
- AUCell: score single cells with gene regulatory networks☆204Mar 9, 2024Updated 2 years ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆461Aug 31, 2026Updated 3 weeks ago
- ☆137Feb 11, 2024Updated 2 years ago
- ☆105May 4, 2026Updated 4 months ago
- ☆135Aug 23, 2026Updated last month
- Extension of SpatialExperiment with sf☆58May 6, 2026Updated 4 months ago
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆17Sep 16, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- LIANA: a LIgand-receptor ANalysis frAmework☆250Aug 7, 2024Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆110Apr 16, 2026Updated 5 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆487Jun 6, 2025Updated last year
- Construct Tumor Transition Zone Microenvironment☆61Jun 25, 2025Updated last year
- An open and interoperable data framework for spatial omics data☆394Updated this week
- ☆145Jun 25, 2026Updated 2 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆674Mar 4, 2026Updated 6 months ago
- Interfaces for HDF5-based Single Cell File Formats☆177Nov 4, 2023Updated 2 years ago
- Scaling Single Cell Analysis to Millions of Cells☆305Jul 13, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆40Jan 13, 2026Updated 8 months ago
- Spatial alignment of single cell transcriptomic data.☆372Jul 1, 2025Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆196Aug 12, 2025Updated last year
- CellRank: dynamics from multi-view single-cell data☆456Sep 16, 2026Updated last week
- Spatial Cellular Estimator for Tumors☆66Sep 15, 2026Updated last week
- ☆34Feb 25, 2025Updated last year
- Spatial Single Cell Analysis in Python☆598Updated this week