prabhakarlab / BanksyLinks
BANKSY: spatial clustering
☆130Updated last month
Alternatives and similar repositories for Banksy
Users that are interested in Banksy are comparing it to the libraries listed below
Sorting:
- Join subcellular Visium HD bins into cells☆129Updated last month
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆136Updated 9 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆86Updated 2 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆120Updated last year
- ☆128Updated last year
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆104Updated 5 months ago
- ☆126Updated 3 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆170Updated 3 months ago
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆71Updated 5 months ago
- Spatial mapping of cell types by integration of transcriptomics data☆98Updated 3 years ago
- Methods to discover gene programs on single-cell data☆164Updated 2 months ago
- A tool for semi-automatic cell type harmonization and integration☆115Updated last month
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 4 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆144Updated last week
- A Bayesian model for compositional single-cell data analysis☆183Updated 2 years ago
- ☆136Updated 7 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆123Updated 7 months ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Cell type prioritization in single-cell data☆128Updated last year
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆86Updated this week
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆129Updated last year
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 3 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆81Updated 8 months ago
- Conversion between scRNA-seq objects☆193Updated last week
- Multiome GRN inference.☆131Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆112Updated last month
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 7 months ago
- Assessing the purity of single cell population☆138Updated 3 years ago
- R package for semi-supervised single-cell data integration☆90Updated 3 months ago