BANKSY: spatial clustering
☆158May 30, 2026Updated last month
Alternatives and similar repositories for Banksy
Users that are interested in Banksy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆85Jul 4, 2026Updated 3 weeks ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆473Jan 22, 2026Updated 6 months ago
- Spatial omics analysis toolbox☆384Jun 2, 2026Updated last month
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆289Jul 15, 2026Updated last week
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆151Feb 20, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆181Jul 13, 2026Updated last week
- Probabilistic cell segmentation for in situ spatial transcriptomics☆181Jul 15, 2026Updated last week
- A Toolbox for Spatial Transcriptomics Analysis☆171May 6, 2025Updated last year
- Convert Seurat objects to 10x Genomics Loupe files.☆158Apr 24, 2026Updated 3 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆181Jan 8, 2026Updated 6 months ago
- ☆23Jan 10, 2025Updated last year
- Join subcellular Visium HD bins into cells☆143May 8, 2026Updated 2 months ago
- Spatially-aware quality control for spatial transcriptomics☆16Oct 22, 2025Updated 9 months ago
- Methods for detecting doublets in single-cell sequencing data☆258Jul 7, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Cell-type Relationship Analysis Workflow Done Across Distances☆42Nov 18, 2025Updated 8 months ago
- From geospatial to spatial -omics☆103Jul 16, 2026Updated last week
- AUCell: score single cells with gene regulatory networks☆200Mar 9, 2024Updated 2 years ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆452Jul 13, 2026Updated last week
- ☆136Feb 11, 2024Updated 2 years ago
- ☆102May 4, 2026Updated 2 months ago
- ☆133Mar 27, 2022Updated 4 years ago
- Extension of SpatialExperiment with sf☆57May 6, 2026Updated 2 months ago
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆16Feb 26, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- LIANA: a LIgand-receptor ANalysis frAmework☆245Aug 7, 2024Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆104Apr 16, 2026Updated 3 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆478Jun 6, 2025Updated last year
- An open and interoperable data framework for spatial omics data☆382Updated this week
- Construct Tumor Transition Zone Microenvironment☆61Jun 25, 2025Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆637Mar 4, 2026Updated 4 months ago
- ☆141Jun 25, 2026Updated last month
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆39Jan 13, 2026Updated 6 months ago
- Interfaces for HDF5-based Single Cell File Formats☆178Nov 4, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scaling Single Cell Analysis to Millions of Cells☆296Jul 13, 2026Updated last week
- Spatial alignment of single cell transcriptomic data.☆370Jul 1, 2025Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆194Aug 12, 2025Updated 11 months ago
- CellRank: dynamics from multi-view single-cell data☆454Jul 16, 2026Updated last week
- Spatial Cellular Estimator for Tumors☆65Updated this week
- ☆34Feb 25, 2025Updated last year
- Spatial Single Cell Analysis in Python☆587Updated this week