Alternatives and similar repositories for Banksy:

Users that are interested in Banksy are comparing it to the libraries listed below

• Teichlab / bin2cell
  Join subcellular Visium HD bins into cells
  ☆84Updated 3 months ago
• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆61Updated 2 years ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆99Updated last month
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆59Updated 6 months ago
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆71Updated 3 months ago
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆123Updated 3 weeks ago
• YMa-lab / CARD
  ☆107Updated last year
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆112Updated 6 months ago
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆51Updated 5 months ago
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆102Updated last week
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆103Updated 2 years ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆59Updated 8 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆160Updated this week
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆102Updated last year
• quadbio / Pando
  Multiome GRN inference.
  ☆119Updated 10 months ago
• 10XGenomics / HumanColonCancer_VisiumHD
  Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…
  ☆48Updated 3 weeks ago
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆96Updated 6 months ago
• navinlabcode / CellTrek
  ☆114Updated 2 years ago
• YosefLab / popV
  ☆71Updated this week
• JEFworks-Lab / MERINGUE
  characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…
  ☆67Updated 2 years ago
• jfnavarro / st_pipeline
  ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …
  ☆74Updated last week
• Sanofi-Public / enact-pipeline
  Repository for ENACT pipeline for end-to-end analysis of Visium HD data
  ☆33Updated this week
• Nanostring-Biostats / CosMx-Analysis-Scratch-Space
  This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…
  ☆56Updated this week
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆68Updated last month
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆155Updated 8 months ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆70Updated 6 months ago
• almaan / stereoscope
  Spatial mapping of cell types by integration of transcriptomics data
  ☆89Updated 2 years ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆64Updated this week
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆100Updated 6 months ago
• const-ae / lemur
  Latent Embedding Multivariate Regression
  ☆87Updated 3 months ago