BANKSY: spatial clustering
☆138Oct 15, 2025Updated 5 months ago
Alternatives and similar repositories for Banksy
Users that are interested in Banksy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆76Nov 13, 2025Updated 4 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆444Jan 22, 2026Updated 2 months ago
- Spatial omics analysis toolbox☆365Feb 12, 2026Updated last month
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆267Updated this week
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Feb 20, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Toolbox for Spatial Transcriptomics Analysis☆166May 6, 2025Updated 10 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆161Mar 16, 2026Updated last week
- Join subcellular Visium HD bins into cells☆138Nov 4, 2025Updated 4 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆171Jan 8, 2026Updated 2 months ago
- Methods for detecting doublets in single-cell sequencing data☆236Feb 12, 2026Updated last month
- Convert Seurat objects to 10x Genomics Loupe files.☆148Feb 4, 2026Updated last month
- From geospatial to spatial -omics☆101Mar 18, 2026Updated last week
- AUCell: score single cells with gene regulatory networks☆190Mar 9, 2024Updated 2 years ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆160Mar 13, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Cell-type Relationship Analysis Workflow Done Across Distances☆41Nov 18, 2025Updated 4 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆423Mar 16, 2026Updated last week
- ☆130Feb 11, 2024Updated 2 years ago
- Extension of SpatialExperiment with sf☆57Mar 7, 2026Updated 2 weeks ago
- ☆129Mar 27, 2022Updated 4 years ago
- Construct Tumor Transition Zone Microenvironment☆56Jun 25, 2025Updated 9 months ago
- ☆24Mar 3, 2026Updated 3 weeks ago
- ☆99Updated this week
- LIANA: a LIgand-receptor ANalysis frAmework☆236Aug 7, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Coarse-graining of large single-cell RNA-seq data into metacells☆98Feb 23, 2026Updated last month
- Scaling Single Cell Analysis to Millions of Cells☆271Jan 13, 2026Updated 2 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆470Jun 6, 2025Updated 9 months ago
- ☆134Apr 24, 2024Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆36Jan 13, 2026Updated 2 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆567Mar 4, 2026Updated 3 weeks ago
- Interfaces for HDF5-based Single Cell File Formats☆175Nov 4, 2023Updated 2 years ago
- Spatial alignment of single cell transcriptomic data.☆359Jul 1, 2025Updated 8 months ago
- An open and interoperable data framework for spatial omics data☆356Updated this week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆183Aug 12, 2025Updated 7 months ago
- CellRank: dynamics from multi-view single-cell data☆433Mar 9, 2026Updated 2 weeks ago
- Spatial Cellular Estimator for Tumors☆61Mar 18, 2026Updated last week
- ☆33Feb 25, 2025Updated last year
- Gene group activity utility functions for Scanpy☆100Dec 21, 2024Updated last year
- Spatial Single Cell Analysis in Python☆555Updated this week
- A novel machine learning pipeline to analyse spatial transcriptomics data☆242Mar 12, 2026Updated 2 weeks ago